Plin006897.1
Basic Information
- Insect
- Phylloecus linearis
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_030142575.1
- Location
- JARQTE010000312.1:420168-424907[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.7e-05 0.24 11.5 0.0 21 48 345 372 339 375 0.89 2 5 0.00087 7.9 6.7 0.1 21 48 697 724 692 727 0.90 3 5 0.031 2.8e+02 1.8 0.0 16 41 749 774 740 781 0.79 4 5 0.0016 14 5.9 0.3 21 49 810 837 805 841 0.85 5 5 0.0018 16 5.7 0.1 22 52 839 869 833 871 0.91
Sequence Information
- Coding Sequence
- ATGGAGGCAGGAACATCAGTGGTGTTAGAGTCTTGTGAAGATGAATCTATATTGATACAAACTGTGAATAATATAGTTCAAGCGAATGAAGAGAATGGGGAAGCTACGGAGGAATATTTCGTGGTGACAAATATCCAGAATGAACAGACTGAAGAAATAGAAGTTACTAATGCAAAAGTGATTGATACAGTCAATCACCCTGAAGAGAATTCAAATTGGATGGATATATGCAGAGTTTGTGCTAATTTAAATGACCATCTAATTCCTATTTTCGAGGGTGAGGGTGCTGAGCATGAGCTGTGTAACAAGATTCATAAATACCTGCCTATTCATgTGTCTGAAACTGATAGTTTGCCACTTCAGCTATGTTACCATTGTGCAGCAACACTTTTAGCGTGGCATGAATTGGCTGAAGGATGCCTCGATGCTGAACGTCGTCTTCTTCAAATGCAAACAGAATTTCAACATAAACAACAGCCACATGACGACCAGCAGAATCATATGAAAGAAGATCTGAACGAGGAGACAATTGTCAACAATACTGAAAGGTCCAGTAGAGTCCAGACACCATTTAAAGTATTCCTTGACACGCAGAATATATTTTGGAAGCCGTACAAAAACCCAAATCAACCACAAGACAGAAAACCCACGATGGGAAGGCATACAGACTCGACTTGGATAACCGTTATGGACGCGACCCTTCACCAAGCTCCAATGATGTCTGATCCACTGGCTAGTAATGATTCTGAAATCAAACAAGACAAACGCCGTGTATTCAAGGAGGAGGCCATCAAGGGGTATAGCAAATTACACACGCATACAATAGCCGTAgagaataatatgaataagaaagagagaacaagagctaaatataaaacatgCTCACAAGAATTTGGCCGGGCTGGAGAATTACAGGAGCACAGTAAAGTACACAAAATATTGACCGACATACAGGAATCTCACCAGTGTGTAGATTGCGGAAAGTGTTTCAAACTAAAAGACTCATATTTAAGACACATGAGAATACATACAGATGAGCGACCCTTTACCTGTCACATTTGCGGAAAACAATTTCGCGACTCTGGCGGTTTATCCAGACATCTGAAGGATGTGCACGCTAAAgtgaaaaacttttcttgTGATATTTGTGGCAGATCCTTCGCCTCCAAGGCTACCAGGGATGATCACCGTCGTACTCACACAGGAGAACGACCATACATCTGCGACTCGTGCGGCAAGACATTCAAATCAAAAGCGTTTGGCGCCCCAAGGAAGAAATCCTTTGCGGCATATCGTTCAGCCCAAACGGCCCTTTTATCCAGAAATAGTCCCGCACAATTGAATTCAAAATGCGCGGATCGTGGAGAGCAGGAGGTGACTGATCCCTTAGCGCAAACCGAAGAATCTGACCAAGTTAAAGTAGAAGTGCAGACGTACGACGAGAGTAGTTTGAACTCGGTGGATGGAAGCACTGATTCGGAATACCAACCAGAACGTACAGGAACGCATATCCAAAGAAGAAATCCTACTCGGTCAATTGTACGAAATTCTGTGATATCCAACGAAAATGTCTTGAAACAAGCTAAGACGGTACATCCTTGTGAAAAATGCGAGCGTGTTTTTAAAAGGGAATTTCATTACAAGCGACATGTGGCAAAATGCCATGAGAAAGCTATAACAAGAAGCGATAGCGAGGACTgcactgaaaatattaatgtggAATCTTCACTAAAGACAAAGCTCGTGGAAATTGAAGAATCTAATGTTActgaagaagaaagtgaaaatgaagataagaataatgatTGGGAAGCATGCAATAAATCTAAAAGAAGGAGATTTCAGTCGTATCCTTGCATGCACTGTGACTATActgccaagaaaaaaaagttactcgATTTACACAATATGGAATATCACGCAGAATTGTCAGTGAAGAAGCATAGTAAAAAGCCCAGAAGCATAGACAAAGAGACTGTAAAGCGTGCAAGAATGGAAGTGGATGGAAGAGTTTATTATCACTGTAATGAATGTGGCAAAAATCTCTATTCCCCTTATACGTTCTCTTGGCATATTAGAATTCACACTGGTGAACGCCCTTTTACTTGTCATCTTTGCGGAAAGCAATTTCGCGTCAATCAAGGATTAGCGAGACATCTACGTGAGACTCATGCGGGTATCAAGAAGTTTCCTTGTGACATTTGCGGTCGTATGTTTTCTACAAAACGTAACGCTGAAGATCACAGACGGATACATACTGGCGAGAGACCATACGTATGCAACATATGTGGAAAAGCATTTAAACAAAAGGCTTCGTTATTTGTGCATAATCGCACGCATActgatttttttccattcaaaTGTAGCTATTGCGATCAAGGCTTTCGTACCAGACCACCTCTAATGGTACATATCACTAAGCACACTGGTGAAAAACCTCATTCATGTGACATATGTGGTCGCCGGTTCCGCATAAAATACGAACTGAAGCGTCATCGACTGATACACTTTGATGAGAAACCTTGGCAATGTACAGACTGTGGACTCTCTTTTCGTCAAAAGCGTTATTTAGTTAATCATAAAAAACTCAATCACAACACAATTCCTTCATTGGCCTCGCACGAGTAA
- Protein Sequence
- MEAGTSVVLESCEDESILIQTVNNIVQANEENGEATEEYFVVTNIQNEQTEEIEVTNAKVIDTVNHPEENSNWMDICRVCANLNDHLIPIFEGEGAEHELCNKIHKYLPIHVSETDSLPLQLCYHCAATLLAWHELAEGCLDAERRLLQMQTEFQHKQQPHDDQQNHMKEDLNEETIVNNTERSSRVQTPFKVFLDTQNIFWKPYKNPNQPQDRKPTMGRHTDSTWITVMDATLHQAPMMSDPLASNDSEIKQDKRRVFKEEAIKGYSKLHTHTIAVENNMNKKERTRAKYKTCSQEFGRAGELQEHSKVHKILTDIQESHQCVDCGKCFKLKDSYLRHMRIHTDERPFTCHICGKQFRDSGGLSRHLKDVHAKVKNFSCDICGRSFASKATRDDHRRTHTGERPYICDSCGKTFKSKAFGAPRKKSFAAYRSAQTALLSRNSPAQLNSKCADRGEQEVTDPLAQTEESDQVKVEVQTYDESSLNSVDGSTDSEYQPERTGTHIQRRNPTRSIVRNSVISNENVLKQAKTVHPCEKCERVFKREFHYKRHVAKCHEKAITRSDSEDCTENINVESSLKTKLVEIEESNVTEEESENEDKNNDWEACNKSKRRRFQSYPCMHCDYTAKKKKLLDLHNMEYHAELSVKKHSKKPRSIDKETVKRARMEVDGRVYYHCNECGKNLYSPYTFSWHIRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFSTKRNAEDHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHTDFFPFKCSYCDQGFRTRPPLMVHITKHTGEKPHSCDICGRRFRIKYELKRHRLIHFDEKPWQCTDCGLSFRQKRYLVNHKKLNHNTIPSLASHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01473345;
- 90% Identity
- iTF_01198838;
- 80% Identity
- iTF_01198838;