Cfum010612.2
Basic Information
- Insect
- Cephus fumipennis
- Gene Symbol
- ECU06_1150_2
- Assembly
- GCA_030142355.1
- Location
- JARQSY010000697.1:976551-981548[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 4.7e-05 0.37 11.3 0.0 21 48 355 382 350 385 0.89 2 6 0.00034 2.7 8.6 0.1 22 51 497 526 493 529 0.88 3 6 0.0015 12 6.6 0.2 21 48 804 831 798 834 0.90 4 6 0.053 4.2e+02 1.6 0.0 16 41 856 881 848 888 0.79 5 6 0.0025 20 5.8 0.3 21 49 917 944 912 948 0.85 6 6 0.0031 25 5.5 0.1 22 52 946 976 940 978 0.91
Sequence Information
- Coding Sequence
- ATGAGTGGCGTTCCTCAAGAATATGAGATGGAGGTTGGAACATCAGTTGAGTTGGAGGCTTGTGAAGATGAATCTATACTGATACAAACTGTAAAGAATATAGTTCAAGAGAATGAACAAAATGAAGAAGCTCCGGAGGAATATTTTGTGGTGACAAATATCCAGAATGACCAGAATGGTGAAATAGAAGTTACTAATacaaaagttattgatacaatTAGCCACCCTGAAGAGAATTCAAATTGGATGGATATGTGCAGAGTTTGTGCTAATTTAAATGACCATCTAATCCCTATTTTTGAGGGAGAGGGTGCTGAGCATGAGCTATGtaacaaaattcataaataccTCCCTATTCATgtATCTGAAACTGATAATTTGCCACTCCAGCTGTGTTACCACTGTGCAGCAACACTTTTAGCATGGCACGAATTGGCTGAAGGATGCCTGGATGCTGAACGTCGTCTTCTTCAAATGCAAGATGAATTTCAACATAAACAACAGCCACATGATGAGCAGCAGAATCATATGAAAGGAGATTTGAATGAGGAGACAATTGTCAATGATACTGAAAGGTCCAGTAGAGTCCAGACACCATTTAAAGTATTCCTTGACACGCAGAATATATTTTGGAAGCCGTACAAAAGCCCAAATCAACCACATGATAGAAAACTCATGATGAGAAGGGATACAGACTCGGCTTGGATAACCGTTGTGGACGCGACCCTTCACCAGGCTCCAATGATGTCTGACCCACTGGCTAGTAATGATTCTGAAATTAAACAAGATAAGTCCAATGTATCGAAAGAAGGTATCAGCAAGGGATACAGTAAATTTCACACGCATACGATAGCCGTAgagaataatttgaatgaGGAGCAGGAGAGAACAAGGACTAAATGTGAAACATGCTCACAAGAGTTTGATCTGGCCGGAGACTTACAAGAGCATAGTAAAGTACACAAAGTTTTAACCGACGTACAAGAATCTTATCAATGTCTAGAATGCGGAAAGTGTTTTAAACTAAAAGACTCATATCTAAGGCACATGAGAATACATACAGACGAGCGACCTTTTACCTGTCACATTTGTGGAAAACAATTTCGCGACTCTGGCGGTTTATCCAGACATCTAAAAGATGTGCACGCTAAAGTGAAAAACTTTTCCTGCGATATTTGCGGCAGGTCGTTTGCCTCCAAGGCTACCAGGGATGATCACCGTCGCACTCACACAGGAGAACGACCATACATCTGCGACTCATGCGGCAAGACATTCAAATCAAAAGCGTCTCTCTATATACACAGCAAACTGCATACAGATGAATTTCCACACCTGTGTTCCTActgtaataagaaatttcgtcGAAGACAAGAGATGCTGGCACATGTCACCACTCATACCGGCGAGAAGAATTACGGATGTGACGTATGCTCAAAACGATTCCGTGTCAAATCGGAACTCGTCAGACATAAACTTATTCATTCCGAGGACAAGCCATTTGTGTGCACAAAGTGCGGTCTCGCATTTCGTCAGAAGCGCTATCTCAACAATCACATTAAGAGCAGACATATCGAATCGTCTGGCGCCCCAAGGAAGAAATCCTTTGCGGCATACCGTTCAGCTCAAACGGCACTTTTATCCAGAAATAGTCCCGCACAATTGAATCGAAAATGCGCGGATCCTGGAGAGCAGGAAGTGACTGATCCCTTAGCGCAAACCGGAGAGTCTGACGAAGTTAAAGTAGAAGTGCTGACATACGACGAGAGTAGTCTGAATTCGATGGATGGAAGCACCGACTCAGAGTACCAACCGGAAAGTACAGGAACGCATATCCAAAGAAGAAATCCTACTCGGACAATTGCACGAAATTCTGTGATATCCAACGAACATGTCTCGAAAGAAGCTAAGACGATGCACCCTTGTGAAAAATGTGAACGAGTTTTCAAAAGGGAATTTCATTATAAGCGGCACGTGGCAAAGTGCCACGAGAAATTCGTGACAAGAAGCGACAGCGAGGACTGCACTGAAAGTATTAATGCGGAATCTTCACAAAAGACCAAGCTCGTTGAAATCGAGGAACCGAATGTTActgaagaagaaagtgaaactGATGACAAGAGTGTTGATTGGGAAGCATGCAATAAGTCTAGAAGAAGGAGACTTCAGTCATATCCTTGCATGCATTGTGATTATAcggctaagaaaaaaaagttactcgAATTACACAATATGGAATACCACCCAGAGTTGTCAATTAAGAAGCAAAGTAAAAAGTCCAGAAGCATAGACAAAGACACTGTAAAACGTGCAAGAATGGAAGTGAATGGAAGAgtttattatcattgtaacGAATGTggtaaaaatctttattccCCTTATACATTTTCTTGGCATATGAGAATTCACACTGGTGAACGTCCCTTTACTTGTCATCTTTGCGGAAAACAATTCCGTGTCAATCAGGGGTTGGCAAGACATCTACGCGAGACTCATGCGGGTATCAAGAAGTTTCCTTGTGACATTTGCGGTCGTATGTTTTCTACAAAACGTAACGCTGAGGATCACAGACGAATACATACTGGCGAGAGACCATACGTCTGCAACATATGTGGAAAAGCATTTAAACAAAAGGCTTCGCTGTTTGTGCATAATCGCACGCATACTgacttttttccattcaaatGTAGCTATTGCGATCAAGGTTTTCGTACCAGACCACCTCTAATGGTGCATATCACTAAGCACACTGGTGAGAAACCCCATGCTTGTGACATATGTGGCCGCCGGTTCCGCATAAAATATGAACTAAAGCGACATCGACTGATACACTTTGATGAGAAACCTTGGCAATGTACAGACTGTGGGCTCTCTTTCCGCCAAAAGCGTTATTTAGTTAATCATAAAAAACTGAATCACAACACAATTCCTTCATTGCCTACGCACCAGTAA
- Protein Sequence
- MSGVPQEYEMEVGTSVELEACEDESILIQTVKNIVQENEQNEEAPEEYFVVTNIQNDQNGEIEVTNTKVIDTISHPEENSNWMDMCRVCANLNDHLIPIFEGEGAEHELCNKIHKYLPIHVSETDNLPLQLCYHCAATLLAWHELAEGCLDAERRLLQMQDEFQHKQQPHDEQQNHMKGDLNEETIVNDTERSSRVQTPFKVFLDTQNIFWKPYKSPNQPHDRKLMMRRDTDSAWITVVDATLHQAPMMSDPLASNDSEIKQDKSNVSKEGISKGYSKFHTHTIAVENNLNEEQERTRTKCETCSQEFDLAGDLQEHSKVHKVLTDVQESYQCLECGKCFKLKDSYLRHMRIHTDERPFTCHICGKQFRDSGGLSRHLKDVHAKVKNFSCDICGRSFASKATRDDHRRTHTGERPYICDSCGKTFKSKASLYIHSKLHTDEFPHLCSYCNKKFRRRQEMLAHVTTHTGEKNYGCDVCSKRFRVKSELVRHKLIHSEDKPFVCTKCGLAFRQKRYLNNHIKSRHIESSGAPRKKSFAAYRSAQTALLSRNSPAQLNRKCADPGEQEVTDPLAQTGESDEVKVEVLTYDESSLNSMDGSTDSEYQPESTGTHIQRRNPTRTIARNSVISNEHVSKEAKTMHPCEKCERVFKREFHYKRHVAKCHEKFVTRSDSEDCTESINAESSQKTKLVEIEEPNVTEEESETDDKSVDWEACNKSRRRRLQSYPCMHCDYTAKKKKLLELHNMEYHPELSIKKQSKKSRSIDKDTVKRARMEVNGRVYYHCNECGKNLYSPYTFSWHMRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFSTKRNAEDHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHTDFFPFKCSYCDQGFRTRPPLMVHITKHTGEKPHACDICGRRFRIKYELKRHRLIHFDEKPWQCTDCGLSFRQKRYLVNHKKLNHNTIPSLPTHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01473345;
- 90% Identity
- iTF_01473345;
- 80% Identity
- iTF_00293134;