Plin006897.1
Basic Information
- Insect
- Phylloecus linearis
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_030142575.1
- Location
- JARQTE010000312.1:420168-424907[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.29 20 5.9 0.1 5 23 293 311 292 311 0.94 2 14 5e-06 0.00035 20.9 4.9 1 23 321 343 321 343 0.98 3 14 1.2e-06 8.1e-05 22.9 1.1 1 23 349 372 349 372 0.95 4 14 5.1e-05 0.0036 17.7 0.6 1 23 378 400 378 400 0.98 5 14 0.049 3.4 8.3 1.1 1 13 406 418 406 420 0.91 6 14 0.0053 0.37 11.4 7.2 1 23 532 555 532 555 0.95 7 14 0.39 27 5.5 1.6 1 23 617 640 617 640 0.90 8 14 9.2e-05 0.0064 16.9 1.4 1 23 673 695 673 695 0.98 9 14 1.4e-05 0.00096 19.5 1.6 1 23 701 724 701 724 0.97 10 14 3.3e-06 0.00023 21.4 0.3 1 23 730 752 730 752 0.98 11 14 1.4e-07 9.6e-06 25.8 0.6 1 23 758 780 758 780 0.99 12 14 6.6e-05 0.0046 17.4 0.5 1 23 786 808 786 808 0.98 13 14 1.1e-05 0.00078 19.8 2.4 1 23 814 836 814 836 0.97 14 14 2.5e-05 0.0017 18.7 1.2 2 23 843 865 842 865 0.94
Sequence Information
- Coding Sequence
- ATGGAGGCAGGAACATCAGTGGTGTTAGAGTCTTGTGAAGATGAATCTATATTGATACAAACTGTGAATAATATAGTTCAAGCGAATGAAGAGAATGGGGAAGCTACGGAGGAATATTTCGTGGTGACAAATATCCAGAATGAACAGACTGAAGAAATAGAAGTTACTAATGCAAAAGTGATTGATACAGTCAATCACCCTGAAGAGAATTCAAATTGGATGGATATATGCAGAGTTTGTGCTAATTTAAATGACCATCTAATTCCTATTTTCGAGGGTGAGGGTGCTGAGCATGAGCTGTGTAACAAGATTCATAAATACCTGCCTATTCATgTGTCTGAAACTGATAGTTTGCCACTTCAGCTATGTTACCATTGTGCAGCAACACTTTTAGCGTGGCATGAATTGGCTGAAGGATGCCTCGATGCTGAACGTCGTCTTCTTCAAATGCAAACAGAATTTCAACATAAACAACAGCCACATGACGACCAGCAGAATCATATGAAAGAAGATCTGAACGAGGAGACAATTGTCAACAATACTGAAAGGTCCAGTAGAGTCCAGACACCATTTAAAGTATTCCTTGACACGCAGAATATATTTTGGAAGCCGTACAAAAACCCAAATCAACCACAAGACAGAAAACCCACGATGGGAAGGCATACAGACTCGACTTGGATAACCGTTATGGACGCGACCCTTCACCAAGCTCCAATGATGTCTGATCCACTGGCTAGTAATGATTCTGAAATCAAACAAGACAAACGCCGTGTATTCAAGGAGGAGGCCATCAAGGGGTATAGCAAATTACACACGCATACAATAGCCGTAgagaataatatgaataagaaagagagaacaagagctaaatataaaacatgCTCACAAGAATTTGGCCGGGCTGGAGAATTACAGGAGCACAGTAAAGTACACAAAATATTGACCGACATACAGGAATCTCACCAGTGTGTAGATTGCGGAAAGTGTTTCAAACTAAAAGACTCATATTTAAGACACATGAGAATACATACAGATGAGCGACCCTTTACCTGTCACATTTGCGGAAAACAATTTCGCGACTCTGGCGGTTTATCCAGACATCTGAAGGATGTGCACGCTAAAgtgaaaaacttttcttgTGATATTTGTGGCAGATCCTTCGCCTCCAAGGCTACCAGGGATGATCACCGTCGTACTCACACAGGAGAACGACCATACATCTGCGACTCGTGCGGCAAGACATTCAAATCAAAAGCGTTTGGCGCCCCAAGGAAGAAATCCTTTGCGGCATATCGTTCAGCCCAAACGGCCCTTTTATCCAGAAATAGTCCCGCACAATTGAATTCAAAATGCGCGGATCGTGGAGAGCAGGAGGTGACTGATCCCTTAGCGCAAACCGAAGAATCTGACCAAGTTAAAGTAGAAGTGCAGACGTACGACGAGAGTAGTTTGAACTCGGTGGATGGAAGCACTGATTCGGAATACCAACCAGAACGTACAGGAACGCATATCCAAAGAAGAAATCCTACTCGGTCAATTGTACGAAATTCTGTGATATCCAACGAAAATGTCTTGAAACAAGCTAAGACGGTACATCCTTGTGAAAAATGCGAGCGTGTTTTTAAAAGGGAATTTCATTACAAGCGACATGTGGCAAAATGCCATGAGAAAGCTATAACAAGAAGCGATAGCGAGGACTgcactgaaaatattaatgtggAATCTTCACTAAAGACAAAGCTCGTGGAAATTGAAGAATCTAATGTTActgaagaagaaagtgaaaatgaagataagaataatgatTGGGAAGCATGCAATAAATCTAAAAGAAGGAGATTTCAGTCGTATCCTTGCATGCACTGTGACTATActgccaagaaaaaaaagttactcgATTTACACAATATGGAATATCACGCAGAATTGTCAGTGAAGAAGCATAGTAAAAAGCCCAGAAGCATAGACAAAGAGACTGTAAAGCGTGCAAGAATGGAAGTGGATGGAAGAGTTTATTATCACTGTAATGAATGTGGCAAAAATCTCTATTCCCCTTATACGTTCTCTTGGCATATTAGAATTCACACTGGTGAACGCCCTTTTACTTGTCATCTTTGCGGAAAGCAATTTCGCGTCAATCAAGGATTAGCGAGACATCTACGTGAGACTCATGCGGGTATCAAGAAGTTTCCTTGTGACATTTGCGGTCGTATGTTTTCTACAAAACGTAACGCTGAAGATCACAGACGGATACATACTGGCGAGAGACCATACGTATGCAACATATGTGGAAAAGCATTTAAACAAAAGGCTTCGTTATTTGTGCATAATCGCACGCATActgatttttttccattcaaaTGTAGCTATTGCGATCAAGGCTTTCGTACCAGACCACCTCTAATGGTACATATCACTAAGCACACTGGTGAAAAACCTCATTCATGTGACATATGTGGTCGCCGGTTCCGCATAAAATACGAACTGAAGCGTCATCGACTGATACACTTTGATGAGAAACCTTGGCAATGTACAGACTGTGGACTCTCTTTTCGTCAAAAGCGTTATTTAGTTAATCATAAAAAACTCAATCACAACACAATTCCTTCATTGGCCTCGCACGAGTAA
- Protein Sequence
- MEAGTSVVLESCEDESILIQTVNNIVQANEENGEATEEYFVVTNIQNEQTEEIEVTNAKVIDTVNHPEENSNWMDICRVCANLNDHLIPIFEGEGAEHELCNKIHKYLPIHVSETDSLPLQLCYHCAATLLAWHELAEGCLDAERRLLQMQTEFQHKQQPHDDQQNHMKEDLNEETIVNNTERSSRVQTPFKVFLDTQNIFWKPYKNPNQPQDRKPTMGRHTDSTWITVMDATLHQAPMMSDPLASNDSEIKQDKRRVFKEEAIKGYSKLHTHTIAVENNMNKKERTRAKYKTCSQEFGRAGELQEHSKVHKILTDIQESHQCVDCGKCFKLKDSYLRHMRIHTDERPFTCHICGKQFRDSGGLSRHLKDVHAKVKNFSCDICGRSFASKATRDDHRRTHTGERPYICDSCGKTFKSKAFGAPRKKSFAAYRSAQTALLSRNSPAQLNSKCADRGEQEVTDPLAQTEESDQVKVEVQTYDESSLNSVDGSTDSEYQPERTGTHIQRRNPTRSIVRNSVISNENVLKQAKTVHPCEKCERVFKREFHYKRHVAKCHEKAITRSDSEDCTENINVESSLKTKLVEIEESNVTEEESENEDKNNDWEACNKSKRRRFQSYPCMHCDYTAKKKKLLDLHNMEYHAELSVKKHSKKPRSIDKETVKRARMEVDGRVYYHCNECGKNLYSPYTFSWHIRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFSTKRNAEDHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHTDFFPFKCSYCDQGFRTRPPLMVHITKHTGEKPHSCDICGRRFRIKYELKRHRLIHFDEKPWQCTDCGLSFRQKRYLVNHKKLNHNTIPSLASHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01473345;
- 90% Identity
- iTF_01199067;
- 80% Identity
- iTF_01199067;