Basic Information

Insect: Trachelus stipa
Gene Symbol: ECU06_1150
Assembly: GCA_036026315.1
Location: JAYRCB010000403.1:569943-574948[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.016 1.6 9.9 0.2 2 23 297 318 296 318 0.97

2 16 1.3e-06 0.00013 22.8 3.4 1 23 328 350 328 350 0.99

3 16 1.4e-06 0.00013 22.7 1.1 1 23 356 379 356 379 0.95

4 16 6e-05 0.0058 17.6 0.6 1 23 385 407 385 407 0.98

5 16 4.2e-05 0.0041 18.0 0.9 1 23 413 435 413 435 0.96

6 16 4.8e-05 0.0047 17.9 3.0 1 23 441 463 441 463 0.97

7 16 0.0001 0.01 16.8 0.5 3 23 471 491 469 491 0.97

8 16 0.0075 0.73 11.0 6.6 1 23 614 637 614 637 0.92

9 16 0.085 8.3 7.6 1.6 1 23 699 722 699 722 0.91

10 16 5.8e-05 0.0056 17.6 1.8 1 23 755 777 755 777 0.98

11 16 1.6e-05 0.0016 19.4 1.6 1 23 783 806 783 806 0.97

12 16 3.9e-06 0.00038 21.3 0.3 1 23 812 834 812 834 0.98

13 16 1.6e-07 1.6e-05 25.7 0.6 1 23 840 862 840 862 0.99

14 16 7.7e-05 0.0075 17.2 0.5 1 23 868 890 868 890 0.98

15 16 1.5e-05 0.0014 19.5 1.6 1 23 896 918 896 918 0.96

16 16 2.9e-05 0.0028 18.6 1.2 2 23 925 947 924 947 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.016	1.6	9.9	0.2	2	23	297	318	296	318	0.97
2	16	1.3e-06	0.00013	22.8	3.4	1	23	328	350	328	350	0.99
3	16	1.4e-06	0.00013	22.7	1.1	1	23	356	379	356	379	0.95
4	16	6e-05	0.0058	17.6	0.6	1	23	385	407	385	407	0.98
5	16	4.2e-05	0.0041	18.0	0.9	1	23	413	435	413	435	0.96
6	16	4.8e-05	0.0047	17.9	3.0	1	23	441	463	441	463	0.97
7	16	0.0001	0.01	16.8	0.5	3	23	471	491	469	491	0.97
8	16	0.0075	0.73	11.0	6.6	1	23	614	637	614	637	0.92
9	16	0.085	8.3	7.6	1.6	1	23	699	722	699	722	0.91
10	16	5.8e-05	0.0056	17.6	1.8	1	23	755	777	755	777	0.98
11	16	1.6e-05	0.0016	19.4	1.6	1	23	783	806	783	806	0.97
12	16	3.9e-06	0.00038	21.3	0.3	1	23	812	834	812	834	0.98
13	16	1.6e-07	1.6e-05	25.7	0.6	1	23	840	862	840	862	0.99
14	16	7.7e-05	0.0075	17.2	0.5	1	23	868	890	868	890	0.98
15	16	1.5e-05	0.0014	19.5	1.6	1	23	896	918	896	918	0.96
16	16	2.9e-05	0.0028	18.6	1.2	2	23	925	947	924	947	0.94

Sequence Information

Coding Sequence: ATGAGTGGCGTTCCTCAAGAATATGAGATGGAGGTTGAAACATCAGTTGAGTTGGAGGCTTGTGAAGATGAATCTCTACTGATTCAAACTGTAAAGAATAtagttgaagaaaatgaagaagctACGGAGGAATATTTTGTGGTGACAAATATCCAAAATGACCAGAATGGTGAAATAGAGGCTACTAATGCAAAAGTGATTGATACAATTAGTCACCCTGAAGAGAATTCAAATTGGATGGATATGTGCAGAGTTTGTGCTAATTTAAATGACCATCTAATCCCTATTTTTGAGGGTGAGGGTGCTGAGCATGAGCTATGtaacaaaattcataaataccTCCCTATTCATgtATCTGAAACTGATAATTTGCCACTCCAGCTGTGTTACCACTGTGCAGCAACACTTTTAGCATGGCACGAATTGGCTGAAGGATGCCTGAATGCTGAACGTCGTCTTCTTCAAATACAAGAAGAATTTCAACATAAACAACAGcCACATGATGAGCAGCAGAATCATATAAAAGGAGATCTGAATGAAGAGACAATCGTCAATGATACTGAAAGGTCCAGTAGAGTCCAGACACCATTTAAAGTATTCCTTGACACGCAGAATATATTTTGGAAGCCGTACAAAAGCCCAAATCAACCACATGACAGAAAACGCATGATGAGAAGGGATACAGACTCGGCTTGGATAACCGTTGTGGACGCGACCCTTCACCAGGCTCCAATGATGTCTGACCCACTGGCTAGTAATGATTCTGAAATTAAACAAGATAAGTCCAATGTATCGAAAGAAGGTATCACCAAGGGATACACTAAATTTCACACGCATACGATAGCCGTAGAGAATAATTTGAATGAGGAGCAGGAGAGAACAAGGACTAAATGTGAAACATGCTCACAAGAATTTGATATGGCTGGAGACTTACAAGAGCATAGTAAAGTACACAAAGTTTTAACCGATATACAAGAATCTTATCAATGTCTAGAATGCGGAAAGTGTTTCAAACTAAAAGACTCATATCTAAGGCACATGAGAATACATACAGACGAGCGACCTTTTACCTGTCACATTTGTGGAAAACAATTCCGCGACTCTGGCGGTTTATCCAGACATCTAAAAGATGTACACGCTAAAGTGAAAAACTTTTCCTGCGATATTTGCGGCAGGTCGTTTGCCTCCAAGGCTACCAGGGATGATCACCGTCGCACTCACACAGGAGAACGACCGTACATCTGCGACTCGTGCGGCAAGACATTCAAATCAAAAGCGTCTCTCTATATACACAGCAAACTGCATACGGATGAATTTCCACACCCGTGTTCCTACTGTAATAAGAAATTTCGTCGAAGACAAGAGATGCTGGCACATATCACCACTCATACCGGCGAGAAGAATTACGGATGTGACGTATGCTCAAAACGATTCCGTGTCAAATCGGAACTCGTCAGACATAAACTTATTCATTCCGAAGACAAGCCATTTGTGTGCACAAAGTTTGGCGCCCCAAGGAAGAAATCCTTTGCGGCATACCGTTCAGCTCAAACGGCACTTTTATCCAGAAATAGTCCCGCACAATTGAATCGAAAATGCGCGGATTCTGGAGAGCAGGAAGTGACTGATCCCTTAGCGCAAACCGGAGAGTCTGACGAAGTTAAAGTAGAAGTGCTGACATACGACGAGAGTAGTCTGAATTCGGTGGATGGAAGCACCGACTCAGAGTACGAACCGGAAAGTACAGGAACGCATATCCAAAGAAGAAATCCTACTCGGATAATTGCTCGAAATTCTGTGATATCCAACGAACATGTCTCGAAACAAGCTAGGACGATGCATCCTTGTGAAAAATGTGAGCGAGTTTTCAAAAGGGAATTTCATTATAAGCGGCACGTGGCAAACTGCCACGAGAAAGTTGTGACAAGAAGCGACAGCGAGGACTGCACTGAAAGTATTAATGCGGAACCTTCACAAAAGACCAAGCTTGTTGAAATCGAGGAACCGAATGTTACtgaagaagaaagtgaaacCGATGATAAGAGTGTTGATTGGGAAGCATGCAATAAGTCTAGAAGGAGGAGACTTCAGTCATATCCTTGCATGCATTGTGATTATACGgctaagaaaaagaagttacTCGAATTACATAATATGGAATACCACCCAGAATTGTCAATtaagaaacaaagtaaaaagcCTAGAAGCATAGACAAAGAGACTGTAAAACGTGCAAGAATGGAAGTGAATGGAAGAgtttattatcattgtaaCGAATGTggtaaaaatctttattccCCTTATACATTCTCTTGGCATATGAGAATTCACACTGGTGAACGTCCGTTTACTTGTCATCTTTGCGGAAAACAATTCCGTGTTAATCAGGGGTTGGCAAGACATCTACGCGAGACTCATGCGGGTATCAAGAAGTTTCCTTGTGACATTTGCGGTCGTATGTTTTCTACAAAACGTAACGCTGAGGATCACAGACGGATACATACTGGCGAGAGACCATACGTCTGCAACATATGTGGAAAAGCATTTAAACAAAAGGCTTCACTGTTTGTGCATAATCGCACGCATACTGACTTTTTTCCATTCAAATGTAGCTATTGCGATCAAGGCTTTCGTACCAGACCACCTCTAATGGTGCATATCACTAAGCACACTGGTGAAAAACCCCATGCATGTGACATATGTGGTCGCCGGTTCCGCATAAAATATGAACTGAAGCGACATCGACTGATACACTTTGATGAGAAACCTTGGCAATGTACAGACTGTGGGCTCTCTTTCCGCCAAAAGCGTTATTTAGTTAATCATAAAAAACTGAATCACAACACAATTCCTTCATTGCCTACGCACGAGTAA
Protein Sequence: MSGVPQEYEMEVETSVELEACEDESLLIQTVKNIVEENEEATEEYFVVTNIQNDQNGEIEATNAKVIDTISHPEENSNWMDMCRVCANLNDHLIPIFEGEGAEHELCNKIHKYLPIHVSETDNLPLQLCYHCAATLLAWHELAEGCLNAERRLLQIQEEFQHKQQPHDEQQNHIKGDLNEETIVNDTERSSRVQTPFKVFLDTQNIFWKPYKSPNQPHDRKRMMRRDTDSAWITVVDATLHQAPMMSDPLASNDSEIKQDKSNVSKEGITKGYTKFHTHTIAVENNLNEEQERTRTKCETCSQEFDMAGDLQEHSKVHKVLTDIQESYQCLECGKCFKLKDSYLRHMRIHTDERPFTCHICGKQFRDSGGLSRHLKDVHAKVKNFSCDICGRSFASKATRDDHRRTHTGERPYICDSCGKTFKSKASLYIHSKLHTDEFPHPCSYCNKKFRRRQEMLAHITTHTGEKNYGCDVCSKRFRVKSELVRHKLIHSEDKPFVCTKFGAPRKKSFAAYRSAQTALLSRNSPAQLNRKCADSGEQEVTDPLAQTGESDEVKVEVLTYDESSLNSVDGSTDSEYEPESTGTHIQRRNPTRIIARNSVISNEHVSKQARTMHPCEKCERVFKREFHYKRHVANCHEKVVTRSDSEDCTESINAEPSQKTKLVEIEEPNVTEEESETDDKSVDWEACNKSRRRRLQSYPCMHCDYTAKKKKLLELHNMEYHPELSIKKQSKKPRSIDKETVKRARMEVNGRVYYHCNECGKNLYSPYTFSWHMRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFSTKRNAEDHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHTDFFPFKCSYCDQGFRTRPPLMVHITKHTGEKPHACDICGRRFRIKYELKRHRLIHFDEKPWQCTDCGLSFRQKRYLVNHKKLNHNTIPSLPTHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01473345;
90% Identity: iTF_01473345;
80% Identity: iTF_01474342;