Cfil007057.2
Basic Information
- Insect
- Calameuta filiformis
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_030142265.1
- Location
- JARQSU010000398.1:438070-443114[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.48 4.6e+03 -2.1 0.0 20 44 294 318 283 322 0.80 2 7 3e-05 0.29 11.4 0.0 21 48 355 382 350 385 0.89 3 7 0.46 4.4e+03 -2.0 0.0 22 46 469 493 467 501 0.76 4 7 0.00095 9.1 6.6 0.2 21 48 782 809 776 812 0.90 5 7 0.035 3.3e+02 1.6 0.0 16 41 834 859 826 866 0.79 6 7 0.0016 16 5.8 0.3 21 49 895 922 890 926 0.85 7 7 0.002 19 5.5 0.1 22 52 924 954 918 956 0.91
Sequence Information
- Coding Sequence
- ATGAGTGGCGTTCCTCAAGAATATGAGATGGAGGTTGGAACATCAGTTGAGTTGGAGGCTTCTGAAGATGAATCTATACTCATACAAACTGTAAAGAATATAGTtcaagagaatgaagaaaatgaagaagctACGGAGGAATATTTTGTGGTGACAAATATCCAGAATGACCAAACTGGTGAAATAGAAGTTACTAATGCAAAAGTGATTGATACAATCAGTCACCCTGAAGAGAATTCAAATTGGATGGATATGTGCAGAGTTTGTGCTAATTTAAATGACCATCTAATCCCTATTTTTGAGGGTGAAGGTGCTGAGCATGAGCTATGCAACAAAATTCATAAGTACCTCCCTATTCATgtATCTGAAACTGATAATTTGCCACTCCAGCTGTGTTACCACTGTGCAGCAACACTTTTAGCATGGCACGAATTGGCTGAAGGATGCCTGGATGCTGAACGTCGTCTTCTTCAAATGCAAGAAGATTTTCAACATAAACAACAGCCACATGATGAGCAGCAGAATCATATGAAAGGAGATCTGAATGAGGAGATAATTGTCAACGATACTGAAAGGTCCAGTAGAGTCCAGACACCATTTAAAGTATTCCTTGACACGcagaatatattttggaaGCCGTACAAAAGCCCAAATCAACCACATGACAGAAAACTCATGATGAGAAGGGATACAGACTCGGCTTGGATAACCGTTGTGGACGCGACCCTTCACCAGGCTCCAATGATGCCTGACCCACTGGCTAGTAATGATTCTGAAATTAAACAAGATAAGTCCAATGTATCGAAAGAAGCTATCACCAAGGGGTACAGTAAATTACACACGCATACGATAGCCCTAGAGAATCATTTGACtgaggagcaagagagaacAAGGACTACATGTGAAACATGCTCACAAGAATTTGATCAGGCTGAAGACTTACAAGAGCATAGTAAAGTACACAAAGTTTTAACCGACATACAAGAATCTCATCAATGCCTAGAATGCGGAAAGTGTTTCAAACTAAAAGACTCATATCTAAGGCACATGAGAATACATACAGACGAGCGGCCTTTTACCTGTCACATTTGTGGAAAACAATTCCGCGACTCTGGCGGTTTATCCAGACATCTAAAAGATGTGCATGCTAAAGTGAAAAACTTTTCCTGTGATATTTGCGGCAGGTCGTTTGCCTCCAAGGCTACCAGGGATGATCACCGTCGCACTCACACGGGAGAACGACCGTACATCTGCGACTCGTGCGGCAAGACATTCAAATCAAAAGCGTCTCTCTATATACACAGCAAACTGCATACAGATGAATTTCCACACCCGTGTTCCTActgtaataagaaatttcgtcGAAGACAAGAAATGCTGGCACATGTCACCACTCATACCGGCGAGAAGAATTACGTATGTGACGTATGCTCAAAACGATTCCGTGTCAAATCGGAACTCGTCAGACATAAACTTATTCATTCCGAGGATAAACCATTTGTGTGCACAAAGTTTGGCGCCCCAAGGAAGAAATCCTTTGCGGCATACCGTTCAGCTCAAATGGCACTTTTATCCAGAAATAGTCCCACACAATTGAATCGAAAATGCGCGGATCCTGGAGAGCAGGATGTGACTGATCCCTTAGCGCAAACCGGAGAGTCTGACGAAGTGAAAGTAGAAGTGCTGACATACGACGAGAGTAGTCTAAATTCGGTGGATGGAAGCACCGACTCGGAGTACCAACCGGAAAATACAGGAACGCATATCCAAAGAAGAAATCCTATTCGTACAATTGCACGAAATTCTGTGATATCCAACGAAAATGTCTCGAAACAAGCTAAGACGATGCACCCTTGTGAAAAATGTGAGCGAGTTTTCAAAagagaatttcattataaGCGGCACGTGGCCAACTGCCACGAGAAAATGGTAACAAGAAGCGACAGCGAGGACTGCACTGAAAGTATTAATGCGGAATCTTCACTAAAGACCAAGCTCGTTGAAATCGAGGAACCGAATGTTACtgaagaagaaagtgaaactGATAATAAGATTGTTGATTGGGAAGCATGCAATAAGTCTAGAAGAAGGAGACTTCAGTCATATCCTTGCATGCATTGTGATTATACGgctaagaaaaagaagttacTCGAATTACATAATGTGGAATACCACCCAGAATTGTCAATTaagaaacaaagtaaaaagCCCAGAAGCATAGACAAAGAGACTGTAAAACGTGCAAGAATGGAAGTGAATGGTAGagtttattatcattgtaacGAATGTggtaaaaatctttattccCCTTATACATTCTCTTGGCATATGAGAATTCACACTGGTGAACGTCCCTTTACTTGTCATCTTTGCGGAAAACAATTCCGTGTCAATCAGGGGTTGGCAAGACATCTACGCGAGACTCATGCGGGTATCAAGAAGTTTCCTTGTGACATTTGCGGTCGTATGTTTTCTACAAAACGTAATGCTGAAGATCACAGGCGGATACATACTGGCGAGAGACCATACGTGTGCAACATATGTGGAAAAGCTTTTAAACAAAAGGCTTCGCTGTTTGTGCATAATCGCACGCATACTGACTTTTTTCCATTCAAATGTAGCTATTGCGATCAAGGCTTTCGTACCAGACCACCTCTAATGGTGCATATCACTAAGCACACTGGTGAAAAACCCCATGCATGTGACATATGTGGTCGCCGGTTTCGCATAAAATATGAACTAAAGCGACATCGACTGATACACTTTGATGAGAAACCTTGGCAATGTACAGACTGTGGGCTCTCTTTCCGCCAAAAGCGTTATTTAGTTAATCATAAAAAACTGAATCACAACACAATTCCTTCATTGCCTACGCACGAGTAA
- Protein Sequence
- MSGVPQEYEMEVGTSVELEASEDESILIQTVKNIVQENEENEEATEEYFVVTNIQNDQTGEIEVTNAKVIDTISHPEENSNWMDMCRVCANLNDHLIPIFEGEGAEHELCNKIHKYLPIHVSETDNLPLQLCYHCAATLLAWHELAEGCLDAERRLLQMQEDFQHKQQPHDEQQNHMKGDLNEEIIVNDTERSSRVQTPFKVFLDTQNIFWKPYKSPNQPHDRKLMMRRDTDSAWITVVDATLHQAPMMPDPLASNDSEIKQDKSNVSKEAITKGYSKLHTHTIALENHLTEEQERTRTTCETCSQEFDQAEDLQEHSKVHKVLTDIQESHQCLECGKCFKLKDSYLRHMRIHTDERPFTCHICGKQFRDSGGLSRHLKDVHAKVKNFSCDICGRSFASKATRDDHRRTHTGERPYICDSCGKTFKSKASLYIHSKLHTDEFPHPCSYCNKKFRRRQEMLAHVTTHTGEKNYVCDVCSKRFRVKSELVRHKLIHSEDKPFVCTKFGAPRKKSFAAYRSAQMALLSRNSPTQLNRKCADPGEQDVTDPLAQTGESDEVKVEVLTYDESSLNSVDGSTDSEYQPENTGTHIQRRNPIRTIARNSVISNENVSKQAKTMHPCEKCERVFKREFHYKRHVANCHEKMVTRSDSEDCTESINAESSLKTKLVEIEEPNVTEEESETDNKIVDWEACNKSRRRRLQSYPCMHCDYTAKKKKLLELHNVEYHPELSIKKQSKKPRSIDKETVKRARMEVNGRVYYHCNECGKNLYSPYTFSWHMRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFSTKRNAEDHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHTDFFPFKCSYCDQGFRTRPPLMVHITKHTGEKPHACDICGRRFRIKYELKRHRLIHFDEKPWQCTDCGLSFRQKRYLVNHKKLNHNTIPSLPTHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01473345;
- 90% Identity
- iTF_01473345;
- 80% Identity
- iTF_00252246;