Ttro007216.2
Basic Information
- Insect
- Trachelus troglodyta
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_030142635.1
- Location
- JARQTJ010000433.1:438482-443495[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 3e-05 0.3 11.4 0.0 21 48 355 382 350 385 0.89 2 6 0.74 7.3e+03 -2.7 0.0 23 44 470 491 467 500 0.77 3 6 0.00095 9.3 6.6 0.2 21 48 782 809 776 812 0.90 4 6 0.035 3.4e+02 1.6 0.0 16 41 834 859 826 866 0.79 5 6 0.0016 16 5.8 0.3 21 49 895 922 890 926 0.85 6 6 0.002 20 5.5 0.1 22 52 924 954 918 956 0.91
Sequence Information
- Coding Sequence
- ATGAGTGGCGTTCCTCAAGAATATGAGATGGAGGTTGAAACATCGGTTGAGTTGGAAGCTTGTGAAGATGAATCTATACTGATACAAACTGTAAAGAATATAGTtcaagagaatgaagaaaatgaagaagctACGGAGGAATATTTTGTGGTGACAAATATCCAAAATGACCAGAATGGTGAAATAGAGGTTACTAATGCAAAAGTGATTGATACAATTAGTCACCCTGAAGAGAATTCAAATTGGATGGATATGTGCAGAGTTTGTGCTAATTTAAATGACCATCTAATCCCTATTTTCGAGGGTGAGGGTGCTGAGCATGAGCTATGtaacaaaattcataaataccTCCCTATTCATgTATCTGAAACTGATAATTTGCCACTCCAGCTGTGTTACCACTGTGCAGCAACACTTTTAGCATGGCACGAATTGGCTGAAGGATGCCTGAATGCTGAACGTCGTCTTCTTCAAATACAAGAAGAATTTCAACACAAACAACAGCCACATGATGAGCAGCAGAATCATATGAAAGGAGAACTGAATGAGGAGACAATCGTCAATGATACTGAAAGGTCCAGTAGAGTCCAGACACCATTTAAAGTATTCCTTGATACGCAGAATATATTTTGGAAGCCGTACAAAAGCCCAAATCAACCACATGACAGAAAACTCATGATGAGAAGGGATACAGACTCGGCTTGGATAACCGTTGTGGACGCGACCCTTCACCAGCCTCCAATGATGTCTGACCCACTGGCTagtaatgattttgaaattaaacaaGATAAGTCGAATGTATCGAAAGAAGGTATCACCAAGGGATACAGTAAATTTCACACGCATACGATAGCCttagagaaaaatttgaatgaggAGCAGGAGAAAACAAGGACTCAATGTGAAACATGCTCGCAAGAATTTGATCTGGCTGGAGACTTACAAGAGCATAGTAAAGTACACAGAGTTTTAACCGACACACAAGAGTCTTATCAATGTCTAGAATGCGGAAAGTGTTTCAAACTAAAAGACTCATATCTAAGGCACATGAGAATACATACAGACGAGCGACCTTTTACCTGTCACATTTGTGGAAAACAATTCCGCGACTCTGGCGGTTTATCCAGACATCTAAAAGATGTGCACGCTAAAGTGAAAAACTTTTCCTGCGATATTTGCGGCAGGTCGTTTGCTTCCAAGGCTACCAGGGATGATCACCGTCGCACTCACACAGGAGAACGACCGTACATCTGCGACTCGTGCGGCAAGACATTCAAATCAAAAGCGTCTCTCTATATACACAGCAAACTGCATACGGATGAATTTCCACACCCGTGTTCCTActgtaataagaaatttcgtCGAAGGCAAGAGATGCTGGCACATATCACTACTCATACCGGCGAGAAGAATTACGGATGTGACGTATGCTCAAAACGATTCCGTGTCAAATCGGAACTCGTCAGACATAAACTTATTCATTCCGAGGACAAGCCATTTGTGTGCACAAAGTTTGGCGCCCCAAGGAAGAAATCCTTTGCGGCATACCGTTCAGCTCAAACGGCACTTTTATCCAGAAATAGTCCCGCACAATTGAATCGAAAATGCGCGGATCCTGGAGAGCAGGAAGTGACTGATCCCTTAGCGCAAACCGGAGAGTCTGACGAAGTTAAAGTAGAAGTGCTGACATACGATGAGAGTAGCCTGAATTCGGTGGGTGGAAGCACCGACTCAGAGTACGAACCGGAAAGTACAGGAACGCATATCCAAAGAAGAAATCCTACTCGGACAATTGCTCGAAATTCTGTGATATCCAACGAACATGTCTCGAAACAAGCTAGGACGATGCATCCTTGTGAAAAATGTGAGCGAGTTTTCAAAAGGGAATTTCATTATAAGCGGCACGTGGCAAACTGCCACGAGAAAGTTGTGACAAGAAGCGACAGCGAGGACTGCACTGAAAGTATTAATGCGGAATCTTCACAAAAGACCAAGCTTGTTGAAATCGAGGAACCGAATGTTACTGAAGAAGAAAGTGAAACTGACGATAAGAGTGTTGATTGGGAAGCATGCAATAAGTCTAGAAGGAGAAGACTTCAGTCATATCCTTGCATGCATTGTGATTATACGgctaagaaaaagaagttacTCGATTTACACAATATGGAATACCACCCAGAATTGTCAATTaagaaacaaagtaaaaagcCTAGAAGCATAGACAAAGAGACTGTAAAACGTGCAAGAATGGAAGTGAATGGAAGAgtttattatcattgtaaCGAATGTggtaaaaatctttattccCCTTATACATTCTCTTGGCATATGAGAATTCACACTGGTGAACGTCCGTTTACTTGTCATCTTTGCGGAAAACAATTCCGTGTTAATCAGGGATTGGCAAGACATCTGCGCGAGACTCATGCGGGTATCAAGAAGTTTCCTTGTGACATTTGCGGTCGTATGTTTTCTACAAAACGTAACGCTGAGGATCACAGACGGATACATACTGGCGAGAGACCATACGTCTGCAACATATGTGGAAAAGCATTTAAACAAAAGGCTTCACTGTTTGTGCATAATCGCACGCATACTGACTTTTTTCCATTCAAATGTAGCTATTGCGATCAAGGCTTTCGTACCAGACCACCTCTAATGGTGCATATCACTAAGCACACTGGTGAAAAACCCCATGCATGTGACATATGTGGTCGCCGGTTCCGCATAAAATATGAACTAAAGCGACATCGACTGATACACTTTGATGAGAAACCTTGGCAATGTACAGACTGTGGGCTCTCTTTCCGCCAAAAGCGTTATTTAGTTAATCATAAAAAACTGAATCACAACACAATTCCTTCATTGCCTACGCACGAGTAA
- Protein Sequence
- MSGVPQEYEMEVETSVELEACEDESILIQTVKNIVQENEENEEATEEYFVVTNIQNDQNGEIEVTNAKVIDTISHPEENSNWMDMCRVCANLNDHLIPIFEGEGAEHELCNKIHKYLPIHVSETDNLPLQLCYHCAATLLAWHELAEGCLNAERRLLQIQEEFQHKQQPHDEQQNHMKGELNEETIVNDTERSSRVQTPFKVFLDTQNIFWKPYKSPNQPHDRKLMMRRDTDSAWITVVDATLHQPPMMSDPLASNDFEIKQDKSNVSKEGITKGYSKFHTHTIALEKNLNEEQEKTRTQCETCSQEFDLAGDLQEHSKVHRVLTDTQESYQCLECGKCFKLKDSYLRHMRIHTDERPFTCHICGKQFRDSGGLSRHLKDVHAKVKNFSCDICGRSFASKATRDDHRRTHTGERPYICDSCGKTFKSKASLYIHSKLHTDEFPHPCSYCNKKFRRRQEMLAHITTHTGEKNYGCDVCSKRFRVKSELVRHKLIHSEDKPFVCTKFGAPRKKSFAAYRSAQTALLSRNSPAQLNRKCADPGEQEVTDPLAQTGESDEVKVEVLTYDESSLNSVGGSTDSEYEPESTGTHIQRRNPTRTIARNSVISNEHVSKQARTMHPCEKCERVFKREFHYKRHVANCHEKVVTRSDSEDCTESINAESSQKTKLVEIEEPNVTEEESETDDKSVDWEACNKSRRRRLQSYPCMHCDYTAKKKKLLDLHNMEYHPELSIKKQSKKPRSIDKETVKRARMEVNGRVYYHCNECGKNLYSPYTFSWHMRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFSTKRNAEDHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHTDFFPFKCSYCDQGFRTRPPLMVHITKHTGEKPHACDICGRRFRIKYELKRHRLIHFDEKPWQCTDCGLSFRQKRYLVNHKKLNHNTIPSLPTHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01473345;
- 90% Identity
- iTF_01473345;
- 80% Identity
- iTF_01475626;