Tsti006853.2
Basic Information
- Insect
- Trachelus stipa
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_036026315.1
- Location
- JAYRCB010000403.1:569943-574948[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 3e-05 0.4 11.4 0.0 21 48 352 379 347 382 0.89 2 6 0.73 9.8e+03 -2.7 0.0 23 44 467 488 464 497 0.77 3 6 0.00094 13 6.6 0.2 21 48 779 806 773 809 0.90 4 6 0.034 4.6e+02 1.6 0.0 16 41 831 856 823 863 0.79 5 6 0.0016 22 5.8 0.3 21 49 892 919 887 923 0.85 6 6 0.002 27 5.5 0.1 22 52 921 951 915 953 0.91
Sequence Information
- Coding Sequence
- ATGAGTGGCGTTCCTCAAGAATATGAGATGGAGGTTGAAACATCAGTTGAGTTGGAGGCTTGTGAAGATGAATCTCTACTGATTCAAACTGTAAAGAATAtagttgaagaaaatgaagaagctACGGAGGAATATTTTGTGGTGACAAATATCCAAAATGACCAGAATGGTGAAATAGAGGCTACTAATGCAAAAGTGATTGATACAATTAGTCACCCTGAAGAGAATTCAAATTGGATGGATATGTGCAGAGTTTGTGCTAATTTAAATGACCATCTAATCCCTATTTTTGAGGGTGAGGGTGCTGAGCATGAGCTATGtaacaaaattcataaataccTCCCTATTCATgtATCTGAAACTGATAATTTGCCACTCCAGCTGTGTTACCACTGTGCAGCAACACTTTTAGCATGGCACGAATTGGCTGAAGGATGCCTGAATGCTGAACGTCGTCTTCTTCAAATACAAGAAGAATTTCAACATAAACAACAGcCACATGATGAGCAGCAGAATCATATAAAAGGAGATCTGAATGAAGAGACAATCGTCAATGATACTGAAAGGTCCAGTAGAGTCCAGACACCATTTAAAGTATTCCTTGACACGCAGAATATATTTTGGAAGCCGTACAAAAGCCCAAATCAACCACATGACAGAAAACGCATGATGAGAAGGGATACAGACTCGGCTTGGATAACCGTTGTGGACGCGACCCTTCACCAGGCTCCAATGATGTCTGACCCACTGGCTAGTAATGATTCTGAAATTAAACAAGATAAGTCCAATGTATCGAAAGAAGGTATCACCAAGGGATACACTAAATTTCACACGCATACGATAGCCGTAGAGAATAATTTGAATGAGGAGCAGGAGAGAACAAGGACTAAATGTGAAACATGCTCACAAGAATTTGATATGGCTGGAGACTTACAAGAGCATAGTAAAGTACACAAAGTTTTAACCGATATACAAGAATCTTATCAATGTCTAGAATGCGGAAAGTGTTTCAAACTAAAAGACTCATATCTAAGGCACATGAGAATACATACAGACGAGCGACCTTTTACCTGTCACATTTGTGGAAAACAATTCCGCGACTCTGGCGGTTTATCCAGACATCTAAAAGATGTACACGCTAAAGTGAAAAACTTTTCCTGCGATATTTGCGGCAGGTCGTTTGCCTCCAAGGCTACCAGGGATGATCACCGTCGCACTCACACAGGAGAACGACCGTACATCTGCGACTCGTGCGGCAAGACATTCAAATCAAAAGCGTCTCTCTATATACACAGCAAACTGCATACGGATGAATTTCCACACCCGTGTTCCTACTGTAATAAGAAATTTCGTCGAAGACAAGAGATGCTGGCACATATCACCACTCATACCGGCGAGAAGAATTACGGATGTGACGTATGCTCAAAACGATTCCGTGTCAAATCGGAACTCGTCAGACATAAACTTATTCATTCCGAAGACAAGCCATTTGTGTGCACAAAGTTTGGCGCCCCAAGGAAGAAATCCTTTGCGGCATACCGTTCAGCTCAAACGGCACTTTTATCCAGAAATAGTCCCGCACAATTGAATCGAAAATGCGCGGATTCTGGAGAGCAGGAAGTGACTGATCCCTTAGCGCAAACCGGAGAGTCTGACGAAGTTAAAGTAGAAGTGCTGACATACGACGAGAGTAGTCTGAATTCGGTGGATGGAAGCACCGACTCAGAGTACGAACCGGAAAGTACAGGAACGCATATCCAAAGAAGAAATCCTACTCGGATAATTGCTCGAAATTCTGTGATATCCAACGAACATGTCTCGAAACAAGCTAGGACGATGCATCCTTGTGAAAAATGTGAGCGAGTTTTCAAAAGGGAATTTCATTATAAGCGGCACGTGGCAAACTGCCACGAGAAAGTTGTGACAAGAAGCGACAGCGAGGACTGCACTGAAAGTATTAATGCGGAACCTTCACAAAAGACCAAGCTTGTTGAAATCGAGGAACCGAATGTTACtgaagaagaaagtgaaacCGATGATAAGAGTGTTGATTGGGAAGCATGCAATAAGTCTAGAAGGAGGAGACTTCAGTCATATCCTTGCATGCATTGTGATTATACGgctaagaaaaagaagttacTCGAATTACATAATATGGAATACCACCCAGAATTGTCAATtaagaaacaaagtaaaaagcCTAGAAGCATAGACAAAGAGACTGTAAAACGTGCAAGAATGGAAGTGAATGGAAGAgtttattatcattgtaaCGAATGTggtaaaaatctttattccCCTTATACATTCTCTTGGCATATGAGAATTCACACTGGTGAACGTCCGTTTACTTGTCATCTTTGCGGAAAACAATTCCGTGTTAATCAGGGGTTGGCAAGACATCTACGCGAGACTCATGCGGGTATCAAGAAGTTTCCTTGTGACATTTGCGGTCGTATGTTTTCTACAAAACGTAACGCTGAGGATCACAGACGGATACATACTGGCGAGAGACCATACGTCTGCAACATATGTGGAAAAGCATTTAAACAAAAGGCTTCACTGTTTGTGCATAATCGCACGCATACTGACTTTTTTCCATTCAAATGTAGCTATTGCGATCAAGGCTTTCGTACCAGACCACCTCTAATGGTGCATATCACTAAGCACACTGGTGAAAAACCCCATGCATGTGACATATGTGGTCGCCGGTTCCGCATAAAATATGAACTGAAGCGACATCGACTGATACACTTTGATGAGAAACCTTGGCAATGTACAGACTGTGGGCTCTCTTTCCGCCAAAAGCGTTATTTAGTTAATCATAAAAAACTGAATCACAACACAATTCCTTCATTGCCTACGCACGAGTAA
- Protein Sequence
- MSGVPQEYEMEVETSVELEACEDESLLIQTVKNIVEENEEATEEYFVVTNIQNDQNGEIEATNAKVIDTISHPEENSNWMDMCRVCANLNDHLIPIFEGEGAEHELCNKIHKYLPIHVSETDNLPLQLCYHCAATLLAWHELAEGCLNAERRLLQIQEEFQHKQQPHDEQQNHIKGDLNEETIVNDTERSSRVQTPFKVFLDTQNIFWKPYKSPNQPHDRKRMMRRDTDSAWITVVDATLHQAPMMSDPLASNDSEIKQDKSNVSKEGITKGYTKFHTHTIAVENNLNEEQERTRTKCETCSQEFDMAGDLQEHSKVHKVLTDIQESYQCLECGKCFKLKDSYLRHMRIHTDERPFTCHICGKQFRDSGGLSRHLKDVHAKVKNFSCDICGRSFASKATRDDHRRTHTGERPYICDSCGKTFKSKASLYIHSKLHTDEFPHPCSYCNKKFRRRQEMLAHITTHTGEKNYGCDVCSKRFRVKSELVRHKLIHSEDKPFVCTKFGAPRKKSFAAYRSAQTALLSRNSPAQLNRKCADSGEQEVTDPLAQTGESDEVKVEVLTYDESSLNSVDGSTDSEYEPESTGTHIQRRNPTRIIARNSVISNEHVSKQARTMHPCEKCERVFKREFHYKRHVANCHEKVVTRSDSEDCTESINAEPSQKTKLVEIEEPNVTEEESETDDKSVDWEACNKSRRRRLQSYPCMHCDYTAKKKKLLELHNMEYHPELSIKKQSKKPRSIDKETVKRARMEVNGRVYYHCNECGKNLYSPYTFSWHMRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFSTKRNAEDHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHTDFFPFKCSYCDQGFRTRPPLMVHITKHTGEKPHACDICGRRFRIKYELKRHRLIHFDEKPWQCTDCGLSFRQKRYLVNHKKLNHNTIPSLPTHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01473345;
- 90% Identity
- iTF_01473345;
- 80% Identity
- iTF_01474100;