Timm012343.1
Basic Information
- Insect
- Tetramorium immigrans
- Gene Symbol
- -
- Assembly
- GCA_011636585.1
- Location
- VBVO01005246.1:2596-6134[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.039 4.9 8.4 0.2 1 20 29 48 29 50 0.94 2 19 0.00011 0.014 16.4 3.0 1 23 67 89 67 89 0.97 3 19 0.00016 0.02 15.9 1.5 2 23 124 145 123 145 0.94 4 19 0.00036 0.045 14.8 2.8 1 23 149 171 149 171 0.97 5 19 0.00012 0.015 16.3 0.8 3 23 179 199 178 199 0.97 6 19 6e-06 0.00075 20.4 3.3 2 23 206 227 205 227 0.96 7 19 3.6 4.5e+02 2.2 4.0 1 20 236 255 236 258 0.87 8 19 0.05 6.3 8.0 0.4 3 23 266 285 265 285 0.96 9 19 8.6e-06 0.0011 19.9 0.7 3 23 293 313 292 313 0.98 10 19 0.2 24 6.2 1.0 1 23 401 423 401 423 0.84 11 19 1.1e-05 0.0014 19.6 0.7 2 23 432 454 432 454 0.96 12 19 9.1e-06 0.0011 19.8 4.7 1 23 460 482 460 482 0.98 13 19 0.051 6.3 8.0 0.4 1 23 486 508 486 508 0.97 14 19 1.1e-05 0.0013 19.6 1.5 2 23 515 536 514 536 0.96 15 19 8.9e-06 0.0011 19.9 0.2 1 23 542 564 542 564 0.98 16 19 0.041 5.1 8.3 0.7 1 23 570 592 570 592 0.97 17 19 6.5e-07 8.1e-05 23.4 0.2 2 23 599 620 598 620 0.97 18 19 7.3e-07 9.1e-05 23.3 0.8 1 23 626 648 626 648 0.98 19 19 1.1e-07 1.3e-05 25.9 1.9 1 23 654 676 654 676 0.99
Sequence Information
- Coding Sequence
- ATGGAGAGAGAAAATCAAAGTGCATCTTTTGTTATTCTTCAAGAGATCGATGATGAAACTATTCTTGTTCAAAAAGTAACCGCGTATCATTGTGATTCGTGCAACGAAGATTTTGATACAGAAGCTAGTTTGATAATGCACAGAACGGAGCAATCGATACTTAGAACCCGAGAAGCGTTGCGTCAAGCAGAAAAAAAACACGAGTGTGATATATGCGGACAGACATTCTCAAAAATGTTGCAATTGATCAAGCATCACCGAGaacattatgaatatttagacGCACAGAAGAACCAGGACTGGAAAAAGACAGTCACGAAAATTCGGAAGAGTCGAGGGGAGAGTAAGGAATCGTCGACAGATTTCATAAAGTGTGACCAGTGTAAcaagatatttaagaaaaaaaggtaCTTGAACGTGCACAAAGCGCTGCACAGTGAACCGCACATTTGTCATGTGTGCGGTGCGAAACTGACGtcagattattatttgaagattCACATGAGGCGACACAATAAAGAATTTACGGAATTCTGCAACGTTTGTAACAAAGGCTTTTATTTAAAGGCAACTTTAAAGACTCACATGAGTGTGCACACCGACGAGAAGCCATGTGCCTGCGAGATTTGTCACAAATCTTTCGGTAATCGAGCTTACCTGCGTAATCATATGAAGATTCACAGTCAGCCTGAGACGAGGAAAAAATTCAAGTGCGAGATATGCAGCTTCGAGACGTTCTATAGCTACTGCTACAAGGAGCACATATGGACTCACACGGGCGAGAGTCAAGTGGCATGTGAAATATGTGGCAAATTAATCAGACGGCAATACATGAAGACTCACATTAGGATGCACACTGGTGAAAAACCAGAGATTTGTGAGTTTTGCGGTAAGGCGTTCAGCGCCAGGACATATTTGATTAAGCATCGACGAACTCATACCGGTGAAAAGCCTTACAAgtGCGACGAGATTGAAGACGTAAAGTTGGATCCGATCGATGAATTACAAGATATAGAGTTAGTACGATATCAAGATGAAATAGCTACAGTAGAAGAGTATCATCATGTTAGTCATCAAGAAATAGTTATGGAAACGATTGAATTTAAAACTGAAGACTCGAATGAACTAGAATCTGCATCGGaaataaatgtcataaaaCGGACTTCCGAACACGATTCGAGTCGCAAGCGTGCAACAGTTTACGAGTGTGAAATTTGTGGAAAACGAATGCTCAAGAAAATACAGTTTTTGAAGCATAAACAAGAGCACAAGAGGAATTCAAAGATCGAAGGTCGTTGTGAAGAATGTGATAAAGTGTTTGACAATGAGGAGAAGTTGCGAAAGCATTTGATAAAGACACACCAAAAAGAGAAACCTTTTCAATGCGTTCTGTGCGGCAAGTGTTTCAAGACCCAAGAGTTCTTGAAGACTCACCTGAAGCAGCACAACAAACGTTTTACCTGCGACATATGTGGCGTGTCAAAAGTTTCCGGATATGACCTGCGTCTGCACAAGAAGAAACATAATCAGGAATATGTGATTCATTGTGAGATTTGCAATAAGGGTTTTTACACGAATCAAACACTGGAGCGACATTTGCTTACGCACACCGGCGAGAAACCGTTTgtgtgtaaaatatgtaataccgCATATGCGAGCGCAGCATATCTTAATATGCATATGAAGTCCCatggcgagagagagaagcataAGTGTAATATCTGCGATTTCGAGAGCTACTGGAAAGCCGCGCTAAAGGTGCATCTTAAGATACACACCGGCGAGAATCAGATCACGTGCGAGGTGTGTGGAAAGTCCGTTAGCAGCAAGACGTATTTGCAAATTCATATGCGTATACATTCAGGCGAGAAACCGCATGTTTGCGAGATGTGCGGCAAGGCGTTTAGCGTACGGAAGTATTTGATCGTACATCTAAGAACTCATACCGGCGAGAGACCTTACGAGTGTAAAGTGTGCCAGAAGAGATTTACGCAACAGGGCTCACTGAATTCACATATGAAGTCTCATAATGAAACCAAgtga
- Protein Sequence
- MERENQSASFVILQEIDDETILVQKVTAYHCDSCNEDFDTEASLIMHRTEQSILRTREALRQAEKKHECDICGQTFSKMLQLIKHHREHYEYLDAQKNQDWKKTVTKIRKSRGESKESSTDFIKCDQCNKIFKKKRYLNVHKALHSEPHICHVCGAKLTSDYYLKIHMRRHNKEFTEFCNVCNKGFYLKATLKTHMSVHTDEKPCACEICHKSFGNRAYLRNHMKIHSQPETRKKFKCEICSFETFYSYCYKEHIWTHTGESQVACEICGKLIRRQYMKTHIRMHTGEKPEICEFCGKAFSARTYLIKHRRTHTGEKPYKCDEIEDVKLDPIDELQDIELVRYQDEIATVEEYHHVSHQEIVMETIEFKTEDSNELESASEINVIKRTSEHDSSRKRATVYECEICGKRMLKKIQFLKHKQEHKRNSKIEGRCEECDKVFDNEEKLRKHLIKTHQKEKPFQCVLCGKCFKTQEFLKTHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNQEYVIHCEICNKGFYTNQTLERHLLTHTGEKPFVCKICNTAYASAAYLNMHMKSHGEREKHKCNICDFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLQIHMRIHSGEKPHVCEMCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423079; iTF_00867618; iTF_00869053; iTF_01254978; iTF_00264458; iTF_00885319; iTF_00765824; iTF_01245371; iTF_00729508; iTF_00129919; iTF_00126902; iTF_00129175; iTF_00126151; iTF_00128415;
- 90% Identity
- iTF_01423079;
- 80% Identity
- -