Arud007474.1
Basic Information
- Insect
- Aphaenogaster rudis
- Gene Symbol
- -
- Assembly
- GCA_003063815.1
- Location
- NJRL01000302.1:69546-75111[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.013 1.4 9.9 0.4 1 20 58 77 58 78 0.95 2 20 0.0013 0.15 13.0 0.7 1 21 96 116 96 117 0.94 3 20 0.0033 0.36 11.8 1.1 2 23 144 165 143 165 0.94 4 20 0.0004 0.043 14.7 2.3 1 23 169 191 169 191 0.97 5 20 2.2e-05 0.0024 18.6 0.6 3 23 199 219 198 219 0.97 6 20 2.7e-05 0.003 18.4 4.5 2 23 226 247 225 247 0.96 7 20 1.9 2.1e+02 3.1 4.4 1 23 256 278 256 278 0.90 8 20 0.21 23 6.1 0.2 3 23 286 305 285 305 0.94 9 20 8.5e-06 0.00093 19.9 0.8 3 23 313 333 312 333 0.98 10 20 4.3e-07 4.7e-05 24.0 1.5 1 23 339 361 339 361 0.99 11 20 0.54 59 4.8 0.8 1 22 449 470 449 471 0.72 12 20 2.1e-05 0.0023 18.7 1.1 3 23 481 502 480 502 0.96 13 20 1.9e-05 0.0021 18.8 3.2 1 23 508 530 508 530 0.98 14 20 0.056 6.1 7.9 0.4 1 23 534 556 534 556 0.97 15 20 1.2e-05 0.0013 19.5 1.5 2 23 563 584 562 584 0.96 16 20 7.9e-06 0.00086 20.0 0.2 1 23 590 612 590 612 0.98 17 20 0.046 5 8.2 0.7 1 23 618 640 618 640 0.97 18 20 7.2e-07 7.8e-05 23.3 0.2 2 23 647 668 646 668 0.97 19 20 6.6e-07 7.2e-05 23.4 0.6 1 23 674 696 674 696 0.98 20 20 1.2e-07 1.3e-05 25.8 1.9 1 23 702 724 702 724 0.99
Sequence Information
- Coding Sequence
- ATGCAACGGGTAACGGGCGAACGGGTGGGTACCCGTATACCCAGAACTAAAAAATGGAATTCGAGGACACGTCAGAAAAAACCTTTGGTGAAAAAGGAACATCAAGGTGCATCTTTCGTTATCCTCCAAAAGATCGACGACGAAACTGTTCTTGTTCAAGAGGTAACCACGTACCACTGTGATTCATGTAACGAAGATTTTGATACAAAAGCCAGTTTGATAGTTCATAAAACAGAACAATCGATACTTAGAACCAGAGAAGCGTTGCGTCAAGCAAAAAAGAAACACGAGTGTGACATATGCAGACAGACGTTTTCGAAAATGTTTGAATTGATCAAGCATCGCCAAATACAATGTAGGTATCCTCTGGCCGCTGAAAAGAAGCAGAGAAGTCGAAAGGAGAACGAGGAATCGTCAGCAGGTCCCATTGAATGTGATCAGTGTTACAAGGTATTCAAGAAGAAAAGGTATTTGGACGTGCACAAAACGTTACATGGTGCTCCGCATATTTGTCATATATGTGGCGCGAAGTTGACATCggattattatctaaaaattcaCATCAGGCGGCACAATAAGGAGTTCACGGAGTTTTGCGAGATTTGTAACAAAGGGTTCTACTTGAAGGCAAATTTGAAGACTCACATGAGCGTGCACACCGACGAAAAGCCCTGTACTTGCGAGATCTGCCACAAGTCCTTCGGCAATCGAATCTACCTTCGAAGTCACATGAAGATTCACATTCAGCCCGAGACGAGGAAGAAATATAAGTGTGAAATATGCAGCTTTGAAACATTCTATAACTATTGCTATAAGGAGCATATGTGGACTCATACAGGCGAGAACCAAGTGGCATGCGAAGTATGTGGCAAGCTAATTAGTCGGCAGTACATGAAGACTCATATTAGGATACACACGGGCGAGAAACCGGAGATTTGTGAGTTTTGTGGCAAGGCGTTCAGTGCCAGGAAGTATCTGATTAAACATCGGCGAACTCATACCGGTGAAAAGCCTTACCAGTGCAAAATCTGCGAGAAACGTTTTAACCAACGAGGCACTCTTAGTGCGCATCTTCGAAGACACGAGAATCCTAAgtGCGAGGAGATCGACATAGAAGATGTAAAGCTGGACTCGATCGACGAATTGCAAGGTATAGAATTAGTACAATATCAAAACGACGTATCTACAGTGGAAGAGTATGATCACGTCGGTCATCAAGAAATTGTTATGGAAACGATCGAATATAAGACCGAAGATTCAAGCGACAAACTAGTATCTGCGTCGGACATACGTGTTATAAAACGGGTTTCCGGACACGATCCGAGTCGTAAGCGTGCGACGGTTTACGAGTGTGAAATTTGTGGGAAGCAAATGCTCAAAAAGCTGCAGTTTTTGAAGCATAGACAAGACCACGAGAGGAATCCGAAGACCGAAGGTCATTGCGAGGAGTGCGACAAAATCTTCGACAATGAGGAGAAGTTGCGAAAGCATATGATAAAAGCACACCAGAAGGAGAAACCTTTTCAATGCGTTCTGTGCGGCAAGTGTTTCAAGACCGAGGAGTTCTTGAAGATCCACTTGAAGCAACACAACAAACGTTTCACCTGCGACATATGCGGCGTATCGAAGGTCTCCGGATATGATCTGCGTTTGCACAAGAAGAAGCACAACCAGGAATATGTGATTCATTGTGAGATTTGCAACAAAGGCTTTTACACGAATCAGACGCTGGAGCGGCATTTGCTTACACATACTGGTGAGAAGCCGTTTGTGTGTAAAGTATGTAACACTGCGTACGCGAGTGCAGCGTATCTCAACATGCATATGAGGTCTCATGGCGAGAGGGAGAAACACAAGTGCAATATCTGCGATTTCGAGAGCTACTGGAAGGCCGCGCTAAAAGTGCATCTTAAGATACACACCGGCGAGAATCAGATCACGTGCGAGGTGTGCGGGAAGTCCGTAAGCAGCAAGACGTACCTGCAAATTCACATGCGTATACACTCGGGCGAGAAACCACACGTTTGCGAGGTATGCGGCAAGGCGTTCAGTGTACGGAAGTACCTAATCGTGCATTTAAGAACACATACCGGCGAGAGACCTTACGAATGTAAAGTGTGTCAGAAAAGATTTACGCAACAGGGCTCACTAAACTCGCATATGAAGTCTCATAATGAGTGCAAGTGA
- Protein Sequence
- MQRVTGERVGTRIPRTKKWNSRTRQKKPLVKKEHQGASFVILQKIDDETVLVQEVTTYHCDSCNEDFDTKASLIVHKTEQSILRTREALRQAKKKHECDICRQTFSKMFELIKHRQIQCRYPLAAEKKQRSRKENEESSAGPIECDQCYKVFKKKRYLDVHKTLHGAPHICHICGAKLTSDYYLKIHIRRHNKEFTEFCEICNKGFYLKANLKTHMSVHTDEKPCTCEICHKSFGNRIYLRSHMKIHIQPETRKKYKCEICSFETFYNYCYKEHMWTHTGENQVACEVCGKLISRQYMKTHIRIHTGEKPEICEFCGKAFSARKYLIKHRRTHTGEKPYQCKICEKRFNQRGTLSAHLRRHENPKCEEIDIEDVKLDSIDELQGIELVQYQNDVSTVEEYDHVGHQEIVMETIEYKTEDSSDKLVSASDIRVIKRVSGHDPSRKRATVYECEICGKQMLKKLQFLKHRQDHERNPKTEGHCEECDKIFDNEEKLRKHMIKAHQKEKPFQCVLCGKCFKTEEFLKIHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNQEYVIHCEICNKGFYTNQTLERHLLTHTGEKPFVCKVCNTAYASAAYLNMHMRSHGEREKHKCNICDFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNECK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01422378;
- 90% Identity
- iTF_00126902; iTF_00129175; iTF_00126151; iTF_00128415;
- 80% Identity
- -