Lace005058.2
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- -
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000027.1:290422-294174[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.019 3.4 9.7 0.2 1 20 27 46 27 48 0.95 2 20 0.00027 0.048 15.5 1.7 1 23 65 87 65 87 0.97 3 20 7.9e-05 0.014 17.2 1.1 2 23 143 164 142 164 0.94 4 20 0.0002 0.035 16.0 0.3 2 23 169 190 168 190 0.97 5 20 2.9e-05 0.0052 18.6 0.1 3 23 198 218 197 218 0.97 6 20 2.5e-05 0.0045 18.8 4.7 2 23 225 247 224 247 0.96 7 20 0.71 1.3e+02 4.8 0.4 1 23 255 277 255 277 0.92 8 20 0.2 36 6.5 0.3 3 23 285 304 284 304 0.94 9 20 2.8e-07 4.9e-05 24.9 0.8 3 23 312 332 311 332 0.98 10 20 1.1e-07 1.9e-05 26.2 1.4 1 23 338 360 338 360 0.99 11 20 2 3.6e+02 3.3 1.1 1 22 447 468 447 469 0.72 12 20 1.7e-06 0.00031 22.4 0.5 2 23 478 500 477 500 0.96 13 20 3.1e-05 0.0056 18.5 4.0 1 23 506 528 506 528 0.98 14 20 0.07 12 7.9 0.4 1 23 532 554 532 554 0.97 15 20 1.5e-05 0.0026 19.5 1.5 2 23 561 582 560 582 0.96 16 20 5.4e-06 0.00097 20.9 0.2 1 23 588 610 588 610 0.98 17 20 0.057 10 8.2 0.7 1 23 616 638 616 638 0.97 18 20 8.9e-07 0.00016 23.3 0.2 2 23 645 666 644 666 0.97 19 20 8.3e-07 0.00015 23.4 0.6 1 23 672 694 672 694 0.98 20 20 1.5e-07 2.6e-05 25.8 1.9 1 23 700 722 700 722 0.99
Sequence Information
- Coding Sequence
- ATGGAAAGGAAAGATCAAGGATTATCCTTCGTTCTCCTTCAAGATATTGGCGATGCAACTATTATTGTTCAGAACGCGTACCACTGTGATTCATGCAACGAAGATTTTGGAACAGAAGCCAGTTTGATAAGGCACAGAACGGAGCAATCGATACTTAGAACCCGAGAAGCGTTGCGTCAAGCAGAAAAGAAACACGAGTGTAACATATGTGGACAGACGTTCTTAAGAAAGTTGCAATTAATCAAGCATCGCCAGATACATTATAAATATCCTCTAGACATACAGAAGAAGCAGGAATGGAAAAAGACAGCCACGATAAAGACGGCCACGAAAAAGACGGCCACAAAAAAGACAGTCACGAAAAAGACAGTCTTGAAAATCCAGAAGAGCCGAGAAAAAAGCGAGGAATCGTCGGCAGATTTTGTTGAGTGTGACCAGTGTGATAAAgtatttaagaagaaaaggtatTTGAACGTGCACAAAACGTTGCACAGTGAACCGCTCGTTTGTAAGGTGTGCGGTGCGAAGCTGACGTcagattattatttaaaaattcatatgaGGCGACACAATAAGGAGTTTACGGAAATCTGCGGTATTTGTAATAAAGGCTTCTACTTAAAGGCAAATCTGAAGGCTCACATGATTGTGCACACCGATGAGAAGTCATGCACCTGCGAGATCTGCCATAAGACCTTCGGCACTCAAGCTTACTTCCGAAATCATATGAAGATGATTCACAATCAGCCCGAGACGAAGAAATTCAAGTGCGAGATATGCAGCTTCGAGACGGTCTATAAGACAGTCTACAAGGAGCACGTGGGGATTCATACGGGCGAGAGCCAAGTGGCATGTGAAGTATGTGGCAAGCTAATCAGTCGGCAATACATGAAAACTCATATTAGGATGCACACTGGCGAAAAACCAGAGATTTGTGAGTTTTGTGGCAAGGCGTTCAGCCGCAAAGCATATCTGATTAAACATCGGCGAACTCATACTGGTGAAAAACCTTACAGCTGCAAAATCTGCGACAAACGTTTTACCCAACAGGGCACTCTTAGTGCGCATCTTCGGAAACACGAGAATCCTGAatGCAACGCGATTGACATAGAAGACGTAAAACTGGACCCGATCGACGAATTGCAAGGTATAGAGTTAGTACGATATCAAGATGAAGTACCTACAGTGGAAGAGTATCATCACGTTAGTCATCAAGAAATAGTTATGGAAACGATCGAATATAGGACTGAAGACTCGAGCGACAAACTAGAATCTGCGTCGGAGATTCATGTTATAAAACGGGTTTCCGACTACGATTCGAGTCGCAAGCGTGCGGTTTACGAGTGTGAAACTTGTGGGAAACAAATGCTCAAGAAGCTGCAGTTTTTAAAGCATAGACAAGATCACGAGAGGAACTCGAAGACCGAAGATCGTTGCAAGGAGTGCGATAAAGTGTTCGACAATGAAGAGAAGTTGCGAAAGCATATGATAAAGGCACATCAGAAAGAGAAACCTTTTCAATGCGTTCTGTGCGGCAAGTGTTTCAAGACCGAGGAGTTCTTGAAGACCCACTTGAAGCAGCATAACAAACGTTTCACCTGCGACATATGTGGCGTATCGAAGGTTTCCGGATATGACCTGCGTCTGCACAAGAAGAAGCATAATCAGGAATATGTGATTCATTGTGAGATTTGCAACAAGGGCTTCTACACGAATCAAACGCTGGAGCGGCATTTGCTCACGCATACCGGCGAGAAGCCGTTTGtgtgtaaaatatgtaataccGCGTACGCGAGCGCAGCGTATCTCAACATGCATATGAGATCCCATGGCGAGAGAGAAAAGCACAAATGCAATATCTGCGACTTCGAGAGCTACTGGAAGGCCGCGCTAAAAGTGCATCTTAAGATACACACCGGCGAGAATCAGATCACGTGCGAAGTGTGCGGAAAGTCCGTGAGCAGCAAGACGTACTTGCAAATTCATATGCGTATACATTCGGGCGAGAAACCGCATGTTTGCGAGGTGTGCGGAAAGGCGTTCAGTGTACGGAAGTATCTGATCGTACACTTAAGAACGCACACCGGCGAGAGACCTTACGAGTGTAAGGTGTGCCAGAAGAGATTTACGCAACAGGGCTCACTGAACTCGCATATGAAGTCTCATAATGAGAGCAAGtaa
- Protein Sequence
- MERKDQGLSFVLLQDIGDATIIVQNAYHCDSCNEDFGTEASLIRHRTEQSILRTREALRQAEKKHECNICGQTFLRKLQLIKHRQIHYKYPLDIQKKQEWKKTATIKTATKKTATKKTVTKKTVLKIQKSREKSEESSADFVECDQCDKVFKKKRYLNVHKTLHSEPLVCKVCGAKLTSDYYLKIHMRRHNKEFTEICGICNKGFYLKANLKAHMIVHTDEKSCTCEICHKTFGTQAYFRNHMKMIHNQPETKKFKCEICSFETVYKTVYKEHVGIHTGESQVACEVCGKLISRQYMKTHIRMHTGEKPEICEFCGKAFSRKAYLIKHRRTHTGEKPYSCKICDKRFTQQGTLSAHLRKHENPECNAIDIEDVKLDPIDELQGIELVRYQDEVPTVEEYHHVSHQEIVMETIEYRTEDSSDKLESASEIHVIKRVSDYDSSRKRAVYECETCGKQMLKKLQFLKHRQDHERNSKTEDRCKECDKVFDNEEKLRKHMIKAHQKEKPFQCVLCGKCFKTEEFLKTHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNQEYVIHCEICNKGFYTNQTLERHLLTHTGEKPFVCKICNTAYASAAYLNMHMRSHGEREKHKCNICDFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNESK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01422378;
- 90% Identity
- iTF_00765824;
- 80% Identity
- -