Fase003391.1
Basic Information
- Insect
- Formica aserva
- Gene Symbol
- -
- Assembly
- GCA_037039905.1
- Location
- JAXRKO010000002.1:10824508-10828604[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.031 6.1 9.0 0.1 1 20 63 82 63 84 0.95 2 19 8.9e-06 0.0018 20.1 0.3 1 22 101 122 101 122 0.96 3 19 0.00039 0.078 14.9 2.6 2 23 159 180 158 180 0.94 4 19 0.0002 0.04 15.8 2.2 1 23 184 206 184 206 0.97 5 19 0.00016 0.033 16.1 1.0 3 23 214 234 213 234 0.97 6 19 1.7e-05 0.0033 19.2 4.5 2 23 241 262 240 262 0.96 7 19 0.75 1.5e+02 4.6 4.4 1 23 271 293 271 293 0.89 8 19 0.14 28 6.9 0.3 3 23 301 320 300 320 0.95 9 19 2.2 4.3e+02 3.2 1.9 3 11 328 336 327 340 0.88 10 19 0.61 1.2e+02 4.9 0.8 1 22 424 445 424 446 0.72 11 19 5.1e-06 0.001 20.9 0.2 2 23 455 477 454 477 0.96 12 19 2.2e-05 0.0043 18.9 3.2 1 23 483 505 483 505 0.98 13 19 0.038 7.7 8.7 0.4 1 23 509 531 509 531 0.97 14 19 1.2e-05 0.0024 19.7 1.9 3 23 539 559 537 559 0.96 15 19 3.2e-05 0.0064 18.3 0.1 1 23 565 587 565 587 0.98 16 19 0.086 17 7.5 0.9 1 23 593 615 593 615 0.97 17 19 4.5e-07 8.9e-05 24.2 0.2 2 23 622 643 621 643 0.97 18 19 7.4e-07 0.00015 23.5 0.6 1 23 649 671 649 671 0.98 19 19 2.5e-07 4.9e-05 25.0 1.5 1 23 677 699 677 699 0.99
Sequence Information
- Coding Sequence
- ATGAAGTATCTGAATCATAATGTGTTACTGAACGCAGCTCTGAAATCATTATACAGTAAaACTCAAAATTGGAGGTTCAAGAATCATCCGGAAAATGTTGCTATAGAAAGGCAAGATCAAGGTGCATCTTTCGTTATTTTTCAAGACATTGATGACAAAACTATTCTTGTTCAAGAGATAGCCGCATATCATTGTGATTCGTGCAACGAAGATTTCGATACAGAGGCCAGTTTGATAGTACATAGAACGGAGCAATCGATACTTAGAACTCGGGAAGCGTTACGTCAAGCAGAAAAGAAATACGAGTGTGACATTTGCGAAGAAACATTTTCAAGAAAACTACAATTGATCAAGCATCGTCGGATGCGATGCAAGTATCCTCTAGATACGCAGAAGAAGCAGGAATGGAAAGATACAATCAcgaaaatcaagaaaaatcGGCAAGAAAATAAGGAATTGTTAGCGGGTCCTATTGAATGCGACGAGTGTCATAAGATATTCAAGAAGAAGAGATATTTGAATGTGCATAAAACGTTGCACGGTGCCCCTCATATTTGTCATGTGTGCGGTGCGAAGTTGACGTCGGAATATTATCTAAAGATTCACATCAGGCGACATAATAAGGAATTCACGGAGTTTTGTAAGGTTTGTAATAAGGGTTTCTATTTGAAAGCGACCTTAAAGACCCATATGAGCGTGCACACCGACGAGAAGCCCTGCACTTGCGAGATCTGCCATAAATCCTTCGGCAATCGAGTTTACCTTCGTAGCCACATGAAGATTCATAGTCTGCCCGAGATGAggaaaaaatacaaatgcgAGATATGTAACTTCGAAACATTTTATAGCTACTGTTACAAAGAGCATATGTGGACTCACACTGGCGAAAGTCAAGTGGCATGCGAAGTATGTGGCAAGCTAATCAGACGACAGTACATGAAGACTCATATTAGGATACATACTGGCGAGAAACCAGAGATTTGTGAGTTTTGTGGCAAAGCGTTTAGCGCCAGAAAgTGCGTCGTGATCGACATAGAAAACACAAAGCTGGAACCGATCGACGAGTTGCAAGATATACAGTTAGCGCGATATCAGGACGAAATATCTACCGTGGAAGAATATCATATCGGTCATCAAGAAATAGTTACGGAAACGATCGAATATACGGCTGATGATTCTAACGATAAACTGGAAGAGCCTGCAACGGATAAAGTAGAtgttataaaacaattttctgaACACGAGACGAGTCGCAAATGTGCGACGATCTACGAGTGTGAAATTTGTGGGAAGCAAATGCTCAAGAAGCTGCAGTTTTTAAAACACAGACAGGATCACAAGAGGAATCCGAAGACAGAGGATCGTTGCGAGGAATGCGATAAGGTCTTCGCGAATGAGGAGAAGCTACGAAAACATTTGATAAAGGCACATCAGAAGGAGAAACCATTTCAATGCGTTTTATGCGGCAAATGTTTCAAGACTGAGGAATTCTTGAAGATCCATCTGAAACAGCATAATAAACGGTTTACCTGCGATATATGCGGTATCTCAAAGGTCTCCGGATACGATCTGCGTCTTCACAAGAAAAAGCACAATCAGGAATACGTGACTCATTGCGAGATGTGCGGCAAGGGTTTCTATACGAATCAGACATTGGAGCGTCACTTGCTTACGCACACCGGCGAGAAACcgtttatttgtaaaatatgtaaCATTGCGTATGCGAGCGCAGCCTATCTCAACATGCATATGAAGTCCCacggcgagagagagaaacacaAATGCAATATCTGCAATTTTGAGAGTTACTGGAAGGCCGCGTTAAAAGTGCATCTTAAGATACACACGGGCGAGAATCAGATCACGTGCGAAATATGCGGCAAATCAGTGAGCAGCAAAACGTATCTGCAGATTCATATGCGTATACACTCGGGTGAGAAACCGCACGTTTGCGAGGTGTGCGGCAAGGCGTTCAGTGTACGAAAGTACTTGATCGTACATCTGAGAACGCACACTGGCGAGAGACCTTATGAGTGTAAGGTGTGTCAGAAAAGATTTACACAGCAGGGTTCGTTAAATTCGCATATAAAATCTCATAATGAGAGTAAATGA
- Protein Sequence
- MKYLNHNVLLNAALKSLYSKTQNWRFKNHPENVAIERQDQGASFVIFQDIDDKTILVQEIAAYHCDSCNEDFDTEASLIVHRTEQSILRTREALRQAEKKYECDICEETFSRKLQLIKHRRMRCKYPLDTQKKQEWKDTITKIKKNRQENKELLAGPIECDECHKIFKKKRYLNVHKTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCKVCNKGFYLKATLKTHMSVHTDEKPCTCEICHKSFGNRVYLRSHMKIHSLPEMRKKYKCEICNFETFYSYCYKEHMWTHTGESQVACEVCGKLIRRQYMKTHIRIHTGEKPEICEFCGKAFSARKCVVIDIENTKLEPIDELQDIQLARYQDEISTVEEYHIGHQEIVTETIEYTADDSNDKLEEPATDKVDVIKQFSEHETSRKCATIYECEICGKQMLKKLQFLKHRQDHKRNPKTEDRCEECDKVFANEEKLRKHLIKAHQKEKPFQCVLCGKCFKTEEFLKIHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNQEYVTHCEMCGKGFYTNQTLERHLLTHTGEKPFICKICNIAYASAAYLNMHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENQITCEICGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHIKSHNESK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01422378;
- 90% Identity
- iTF_01245371;
- 80% Identity
- -