Pimp012972.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- -
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000005.1:5770340-5777067[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.033 6.4 8.9 0.0 1 20 48 67 48 69 0.95 2 19 0.00049 0.097 14.6 1.8 1 20 86 105 86 107 0.93 3 19 7.9e-05 0.015 17.1 2.8 2 23 194 215 193 215 0.95 4 19 0.00055 0.11 14.4 0.9 1 23 219 241 219 241 0.97 5 19 9.8e-05 0.019 16.8 1.0 3 23 249 269 248 269 0.97 6 19 6.7e-06 0.0013 20.5 4.2 2 23 276 297 275 297 0.96 7 19 1.1 2.1e+02 4.1 2.0 1 20 306 325 306 328 0.88 8 19 0.15 29 6.8 0.3 3 23 336 355 335 355 0.95 9 19 0.039 7.7 8.6 0.2 3 21 363 381 362 382 0.91 10 19 0.62 1.2e+02 4.8 1.1 1 23 459 481 459 481 0.77 11 19 0.0001 0.02 16.7 1.2 3 23 492 513 491 513 0.95 12 19 0.00053 0.1 14.5 3.1 1 23 519 541 519 541 0.96 13 19 0.041 7.9 8.6 0.4 1 23 545 567 545 567 0.97 14 19 1.3e-05 0.0025 19.6 1.9 3 23 575 595 573 595 0.96 15 19 2.9e-05 0.0056 18.5 0.1 1 23 601 623 601 623 0.98 16 19 0.091 18 7.5 0.9 1 23 629 651 629 651 0.97 17 19 8.5e-07 0.00017 23.3 0.2 2 23 658 679 657 679 0.97 18 19 4.4e-07 8.6e-05 24.2 0.6 1 23 685 707 685 707 0.98 19 19 2.6e-07 5.1e-05 24.9 1.5 1 23 713 735 713 735 0.99
Sequence Information
- Coding Sequence
- ATGCAGAAGAAACGACTaagtCAAAATTCGGGGTCCAAGAATCCGAAAAATATTGCTGTAGAAAGGCAGAATCAAGGTGCATCTTACGTTATTTTTCAAGACATTGGCAACAAAACTATTCTTGTTCAAAAGATAGCTGCATATAATTGTGATTCGTGCAACGAAGATTTCGATACAGAAGCCAGTTTGATAGTACATAGAACGGAGCAATCGATACTTAGAACTcgagaagcgttacgtcaagCAGAAAAGAAACACGAGTGTAACATTTGCAGACAAACATTTTCAAGCAAGTtacaattaatcaaacatcGTCACATTCGATGCGAGTATCCTCTAGACACGCAGAAGAAGCAGAAATGGAAAAATACAGTCACGAATACAGTCAGTCTTGATCAGAAGATCAAGAAAAATCGAGAAGAGAATAAGGAATTGTCAGCGGGTCCCATCAAATGCGAGTATCCTCTACACACGCAGAAGAAGCAGAAATGGAAAAGTACAGTCACGAATACAGTCAGTCTTGATCAGAAGATCAAGAAAAATCGAGAAGACAATAAGGAATTGTCAGCGGGTCCCATCAAATGCGACGAGTGTCATAAGGTATTCAAGAAGAAGAGATACTTGAACgtgcataaaatattgcaTGGTGCGCCCCATATTTGTTATGTGTGCGGCGCGAAGCTGACGTCGGAATATTATCTGAAGATCCACATCAGGCGACATAATAAAGAATTCACGGAGTTTTGTAAGATTTGTAATAAGGGTTTCTATTTGAAGGCGACCTTAAAGACCCACATGAGCGTGCACACCGATGAGAAGCCCTGTACTTGCGAGATTTGCCACAAATCCTTCGGCAATCAAGTTTACCTTCGTAATCACATGAAGATTCACAGTCAGCCCGAGATGAGGAAAAAGTACAAATGCGAGATATGCAGCTTCGAAACGttttatagttattattaCAAAGAGCACGTGTGGACTCACACCGGTGAGAATCAAGTTGCATGCGAAGTATGTGGCAAGCTAATCAGACGACAGTACATGAAGACTCATATTAGGATCCATACCGGCGAGAAACCGGAGATTTGTGAGTTTTGTGGGAAAGCGTTTAGCGCCAGAAAgTGCGTCGAGATCCACATAGAAAGCACAAAGCTGCAACCGATCGACGAATTGCAAGACATACAGTTAGTGCGATATCAGGACGAAGTATCTGCCGTGGAAGAGTATCATATCAGTCATCAAGAAATAGTTACGGAAACGGTCGAATATACGGCCGACGAATCGAACGATAAACTGGAAAAGTCTGCATCGGATAAAGTAGAcgttataaaacaatttcctGGACCTGAATCGAATCGCAAAAGCGCGACGATTTACGAGTGTGAAATTTGTGGGAAGCAAATGCTCAAGAAGCTGCAATTTTTAAAGCACAGAAAGGATCACAAGAGGAATTTGAAGACCGAAGAGAATTGTTGCGAGGAATGCAATAAGATCTTCGCGAATGAGGAGAAACTACAAAAGCATTTGATAAAGGTGCATCAGAAGGAGAAACCATTTCAATGCATTTTATGCGGCAAATGTTTCAAGACCGAGGAATTCTTGAAGATCCATCTGAAGCAGCACAATAAACGATTCACCTGCGACATATGCGGTATCTCAAAGGTCTCCGGATACGATCTGCGTCTCCACAAGAAGAAGCACAATCAGGAATACGTGACTCATTGCGAGATGTGCGGCAAGGGCTTTTACACGAATCAGACATTGGAGCGTCACTTGCTTACGCACACCGGCGAGAAACCGTTcatctgtaaaatatgtaacatGGCGTACGCGAGCGCAGCCTATCTCAACATGCATATGAAGTCCCACGGCGAGAGGGAGAAGCACAAATGCAACATCTGCAACTTCGAGAGCTACTGGAAGGCCGCGCTGAAAGTGCATTTGAAGATACACACGGGCGAGAATCAGATCACATGCGAAGTATGCGGCAAATCCGTGAGCAGCAAAACGTATCTGCAGATCCACATGCGTATACACTCGGGTGAAAAACCACACGTTTGCGAAATATGCGGCAAGGCATTCAGTGTACGGAAGTACCTGATCGTGCATCTGAGAACGCACACCGGCGAGAGACCTTACGAGTGTAAAGTTTGTCAAAAGAGATTTACGCAGCAGGGTTCGTTAAACTCGCATATAAAATCTCATAATGAGAGTAAATGA
- Protein Sequence
- MQKKRLSQNSGSKNPKNIAVERQNQGASYVIFQDIGNKTILVQKIAAYNCDSCNEDFDTEASLIVHRTEQSILRTREALRQAEKKHECNICRQTFSSKLQLIKHRHIRCEYPLDTQKKQKWKNTVTNTVSLDQKIKKNREENKELSAGPIKCEYPLHTQKKQKWKSTVTNTVSLDQKIKKNREDNKELSAGPIKCDECHKVFKKKRYLNVHKILHGAPHICYVCGAKLTSEYYLKIHIRRHNKEFTEFCKICNKGFYLKATLKTHMSVHTDEKPCTCEICHKSFGNQVYLRNHMKIHSQPEMRKKYKCEICSFETFYSYYYKEHVWTHTGENQVACEVCGKLIRRQYMKTHIRIHTGEKPEICEFCGKAFSARKCVEIHIESTKLQPIDELQDIQLVRYQDEVSAVEEYHISHQEIVTETVEYTADESNDKLEKSASDKVDVIKQFPGPESNRKSATIYECEICGKQMLKKLQFLKHRKDHKRNLKTEENCCEECNKIFANEEKLQKHLIKVHQKEKPFQCILCGKCFKTEEFLKIHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNQEYVTHCEMCGKGFYTNQTLERHLLTHTGEKPFICKICNMAYASAAYLNMHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLQIHMRIHSGEKPHVCEICGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHIKSHNESK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01422378;
- 90% Identity
- -
- 80% Identity
- -