Amia024808.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- -
- Assembly
- GCA_003063725.1
- Location
- NJRN01000018.1:849638-853385[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.012 1.4 10.0 0.4 1 20 55 74 55 75 0.95 2 19 0.0013 0.15 13.1 0.7 1 21 93 113 93 114 0.94 3 19 0.0032 0.36 11.8 1.1 2 23 173 194 172 194 0.94 4 19 0.00039 0.044 14.7 2.3 1 23 198 220 198 220 0.97 5 19 2.2e-05 0.0025 18.7 0.6 3 23 228 248 227 248 0.97 6 19 2.6e-05 0.003 18.4 4.5 2 23 255 276 254 276 0.96 7 19 1.8 2.1e+02 3.1 4.4 1 23 285 307 285 307 0.90 8 19 0.2 23 6.1 0.2 3 23 315 334 314 334 0.94 9 19 0.66 75 4.5 0.4 3 11 342 350 341 353 0.89 10 19 0.53 60 4.8 0.8 1 22 437 458 437 459 0.72 11 19 2.1e-05 0.0023 18.7 1.1 3 23 469 490 468 490 0.96 12 19 1.9e-05 0.0021 18.9 3.2 1 23 496 518 496 518 0.98 13 19 0.054 6.2 8.0 0.4 1 23 522 544 522 544 0.97 14 19 1.1e-05 0.0013 19.5 1.5 2 23 551 572 550 572 0.96 15 19 7.6e-06 0.00087 20.1 0.2 1 23 578 600 578 600 0.98 16 19 0.044 5 8.2 0.7 1 23 606 628 606 628 0.97 17 19 6.9e-07 7.9e-05 23.4 0.2 2 23 635 656 634 656 0.97 18 19 6.4e-07 7.3e-05 23.5 0.6 1 23 662 684 662 684 0.98 19 19 1.1e-07 1.3e-05 25.8 1.9 1 23 690 712 690 712 0.99
Sequence Information
- Coding Sequence
- ATGCCTATTTgcttaaatcaattttatatatatcgAACTAAAAAATGGAATTCGAGGACACGTCAGAAAAAACCTTTGGTGAAAAAGGAACATCAAGGTGCATCTTTCGTTATCCTCCAAAAGATCGACGACGAAACTGTTCTTGTTCAAGAGGTAACCACGTACCACTGTGATTCATGTAACGAAGATTTTGATACAAAAGCCAGTTTGATAGTTCATAAAACAGAACAATCGATACTTAGAACCAGAGAAGCGTTGCGTCAAGCAAAAAAGAAACACGAGTGTGACATATGCAGACAGACGTTTTCGAAAATGTTTGAATTGATCAAGCATCGCCAAATACAATGTAGGTATCCTCTGGCCGCTGAAAAGAAGCAGGTACAGAAAAAAAACGTTACAGTCGTGCACCCAAAGTTACTCCCCTTACCCAtcgggaaagacgtagttctacgtcaaaaagttacaaaaattaaGAGAAGTCGAAAGGAGAACGAGGAATCGTCAGCAGGTCCCATTGAATGTGATCAGTGTTACAAGGTATTCAAGAAGAAAAGGTATTTGGACGTGCACAAAACGTTACATGGTGCTCCGCATATTTGTCATATATGTGGCGCGAAGTTGACATCGgattattatctaaaaattcaCATCAGGCGGCACAATAAGGAGTTCACGGAGTTTTGCGAGATTTGTAACAAAGGGTTCTACTTGAAGGCAAATTTGAAGACTCACATGAGCGTGCACACCGACGAAAAGCCCTGTACTTGCGAGATCTGCCACAAGTCCTTCGGCAATCGAATCTACCTTCGAAGTCACATGAAGATTCACATTCAGCCCGAGACGAGGAAGAAATATAAGTGTGAAATATGCAGCTTTGAAACATTCTATAACTATTGCTATAAGGAGCATATGTGGACTCATACAGGCGAGAACCAAGTGGCATGCGAAGTATGTGGCAAGCTAATTAGTCGGCAGTACATGAAGACTCATATTAGGATACACACGGGCGAGAAACCGGAGATTTGTGAGTTTTGTGGCAAGGCGTTCAGTGCCAGGAAgtGCGAGGAGATCGACATAGAAGATGTAAAGCTGGACTCGATCGACGAATTGCAAGGTATAGAATTAGTACAATATCAAAACGACGTATCTACAGTGGAAGAGTATGATCACGTCGGTCATCAAGAAATTGTTATGGAAACGATCGAATATAAGACCGAAGATTCAAGCGACAAACTAGTATCTGCGTCGGACATACGTGTTATAAAACGGGTTTCCGGACACGATCCGAGTCGTAAGCGTGCGACGGTTTACGAGTGTGAAATTTGTGGGAAGCAAATGCTCAAAAAGCTGCAGTTTTTGAAGCATAGACAAGACCACGAGAGGAATCCGAAGACCGAAGGTCATTGCGAGGAGTGCGACAAAATCTTCGACAATGAGGAGAAGTTGCGAAAGCATATGATAAAAGCACACCAGAAGGAGAAACCTTTTCAATGCGTTCTGTGCGGCAAGTGTTTCAAGACCGAGGAGTTCTTGAAGATCCACTTGAAGCAACACAACAAACGTTTCACCTGCGACATATGCGGCGTATCGAAGGTCTCCGGATATGATCTGCGTTTGCACAAGAAGAAGCACAACCAGGAATATGTGATTCATTGTGAGATTTGCAACAAAGGCTTTTACACGAATCAGACGCTGGAGCGGCATTTGCTTACACATACTGGTGAGAAGCCGTTTGTGTGTAAAGTATGTAACACTGCGTACGCGAGTGCAGCGTATCTCAACATGCATATGAGGTCTCATGGCGAGAGGGAGAAACACAAGTGCAATATCTGCGATTTCGAGAGCTACTGGAAGGCCGCGCTAAAAGTGCATCTTAAGATACACACCGGCGAGAATCAGATCACGTGCGAGGTGTGCGGGAAGTCCGTAAGCAGCAAGACGTACCTGCAAATTCACATGCGTATACACTCGGGCGAGAAACCACACGTTTGCGAGGTATGCGGCAAGGCGTTCAGTGTACGGAAGTACCTAATCGTGCATTTAAGAACACATACCGGCGAGAGACCTTACGAATGTAAAGTGTGTCAGAAAAGATTTACGCAACAGGGCTCACTAAACTCGCATATGAAGTCTCATAATGAGTGCAAGTGA
- Protein Sequence
- MPICLNQFYIYRTKKWNSRTRQKKPLVKKEHQGASFVILQKIDDETVLVQEVTTYHCDSCNEDFDTKASLIVHKTEQSILRTREALRQAKKKHECDICRQTFSKMFELIKHRQIQCRYPLAAEKKQVQKKNVTVVHPKLLPLPIGKDVVLRQKVTKIKRSRKENEESSAGPIECDQCYKVFKKKRYLDVHKTLHGAPHICHICGAKLTSDYYLKIHIRRHNKEFTEFCEICNKGFYLKANLKTHMSVHTDEKPCTCEICHKSFGNRIYLRSHMKIHIQPETRKKYKCEICSFETFYNYCYKEHMWTHTGENQVACEVCGKLISRQYMKTHIRIHTGEKPEICEFCGKAFSARKCEEIDIEDVKLDSIDELQGIELVQYQNDVSTVEEYDHVGHQEIVMETIEYKTEDSSDKLVSASDIRVIKRVSGHDPSRKRATVYECEICGKQMLKKLQFLKHRQDHERNPKTEGHCEECDKIFDNEEKLRKHMIKAHQKEKPFQCVLCGKCFKTEEFLKIHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNQEYVIHCEICNKGFYTNQTLERHLLTHTGEKPFVCKVCNTAYASAAYLNMHMRSHGEREKHKCNICDFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNECK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01422378;
- 90% Identity
- iTF_00129919;
- 80% Identity
- -