Aflo017876.1
Basic Information
- Insect
- Aphaenogaster floridana
- Gene Symbol
- -
- Assembly
- GCA_003063835.1
- Location
- NJRP01000027.1:815569-819456[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.012 1.4 10.0 0.4 1 20 62 81 62 82 0.95 2 19 0.0012 0.14 13.1 0.7 1 21 100 120 100 121 0.94 3 19 0.003 0.35 11.9 1.1 2 23 148 169 147 169 0.94 4 19 0.00037 0.042 14.8 2.3 1 23 173 195 173 195 0.97 5 19 2e-05 0.0024 18.7 0.6 3 23 203 223 202 223 0.97 6 19 2.5e-05 0.0029 18.4 4.5 2 23 230 251 229 251 0.96 7 19 1.7 2e+02 3.2 4.4 1 23 260 282 260 282 0.90 8 19 0.19 22 6.2 0.2 3 23 290 309 289 309 0.94 9 19 0.62 72 4.6 0.4 3 11 317 325 316 328 0.89 10 19 0.5 58 4.9 0.8 1 22 412 433 412 434 0.72 11 19 2e-05 0.0023 18.8 1.1 3 23 444 465 443 465 0.96 12 19 1.8e-05 0.002 18.9 3.2 1 23 471 493 471 493 0.98 13 19 0.051 5.9 8.0 0.4 1 23 497 519 497 519 0.97 14 19 1.1e-05 0.0012 19.6 1.5 2 23 526 547 525 547 0.96 15 19 7.2e-06 0.00084 20.1 0.2 1 23 553 575 553 575 0.98 16 19 0.042 4.8 8.3 0.7 1 23 581 603 581 603 0.97 17 19 6.6e-07 7.6e-05 23.4 0.2 2 23 610 631 609 631 0.97 18 19 6.1e-07 7e-05 23.5 0.6 1 23 637 659 637 659 0.98 19 19 1.1e-07 1.3e-05 25.9 1.9 1 23 665 687 665 687 0.99
Sequence Information
- Coding Sequence
- ATGAAGTATCTGATTCGATGTGTCACTGAGATTGCAGCTCTGAAATTGTACAGTAAAACTAAAAAATGGAATTCGAGGACACGTCAGAAAAAACCTTTGGTGAAAAAGGAACATCAAGGTGCATCTTTCGTTATCCTCCAAAAGATCGACGACGAAACTGTTCTTGTTCAAGAGGTAACCACGTACCACTGTGATTCATGTAACGAAGATTTTGATACAAAAGCCAGTTTGATAGTTCATAAAACAGAACAATCGATACTTAGAACCAGAGAAGCGTTGCGTCAAGCAAAAAAGAAACACGAGTGTGACATATGCAGACAGACGTTTTCGAAAATGTTTGAATTGATCAAGCATCGCCAAATACAATGTAGGTATCCTCTGGCCGCTGAAAAGAAGCAGAGAAGTCGAAAGGAGAACGAGGAATCGTCAGCAGGTCCCATTGAATGTGATCAGTGTTACAAGGTATTCAAGAAGAAAAGGTATTTGGACGTGCACAAAACGTTACATGGTGCTCCGCATATTTGTCATATATGTGGCGCGAAGTTGACATCggattattatctaaaaattcacATCAGGCGGCACAATAAGGAGTTCACGGAGTTTTGCGAGATTTGTAACAAAGGGTTCTACTTGAAGGCAAATTTGAAGACTCACATGAGCGTGCACACCGACGAAAAGCCCTGTACTTGCGAGATCTGCCACAAGTCCTTCGGCAATCGAATCTACCTTCGAAGTCACATGAAGATTCACATTCAGCCCGAGACGAGGAAGAAATATAAGTGTGAAATATGCAGCTTTGAAACATTCTATAACTATTGCTATAAGGAGCATATGTGGACTCATACAGGCGAGAACCAAGTGGCATGCGAAGTATGTGGTAAGCTAATTAGTCGGCAGTACATGAAGACTCATATTAGGATACACACGGGCGAGAAACCGGAGATTTGTGAGTTTTGTGGCAAGGCGTTCAGTGCCAGGAAgtGCGAGGAGATCGACATAGAAGATGTAAAGCTGGACTCGATCGACGAATTGCAAGGTATAGAATTAGTACAATATCAAAACGACGTATCTACAGTGGAAGAGTATGATCACGTCGGTCATCAAGAAATTGTTATGGAAACGATCGAATATAAGACCGAAGATTCAAGCGACAAACTAGTATCTGCGTCGGACATACGTGTTATAAAACGGGTTTCCGGACACGATCCGAGTCGTAAGCGTGCGACGGTTTACGAGTGTGAAATTTGTGGGAAGCAAATGCTCAAAAAGCTGCAGTTTTTGAAGCATAGACAAGACCACGAGAGGAATCCGAAGACCGAAGGTCATTGCGAGGAGTGCGACAAAATCTTCGACAATGAGGAGAAGTTGCGAAAGCATATGATAAAAGCACACCAGAAGGAGAAACCTTTTCAATGCGTTCTGTGCGGCAAGTGTTTTAAGACCGAGGAGTTCTTGAAGATCCACTTGAAGCAACACAACAAACGTTTCACCTGCGACATATGCGGCGTATCGAAGGTCTCCGGATATGATCTGCGTTTGCACAAGAAGAAGCACAACCAGGAATATGTGATTCATTGTGAGATTTGCAACAAAGGCTTTTATACGAATCAGACGCTGGAGCGGCATTTGCTTACACATACTGGTGAGAAGCCGTTTGTGTGTAAAGTATGTAACACTGCGTACGCGAGTGCAGCGTATCTCAACATGCATATGAGGTCTCATGGCGAGAGGGAGAAACACAAGTGCAATATCTGCGATTTCGAGAGCTACTGGAAGGCCGCGCTAAAAGTGCATCTTAAGATACACACCGGCGAGAATCAGATCACGTGCGAGGTGTGCGGGAAGTCCGTAAGCAGCAAGACGTACCTGCAAATTCACATGCGTATACACTCGGGCGAGAAACCACACGTTTGCGAGGTATGCGGCAAGGCGTTCAGCGTACGGAAGTACCTAATCGTGCATTTAAGAACACATACCGGCGAGAGACCTTACGAATGTAAAGTATGTCAGAAAAGATTTACGCAACAGGGCTCACTAAACTCGCATATGAAGTCTCATAATGAGTGCAAGTGA
- Protein Sequence
- MKYLIRCVTEIAALKLYSKTKKWNSRTRQKKPLVKKEHQGASFVILQKIDDETVLVQEVTTYHCDSCNEDFDTKASLIVHKTEQSILRTREALRQAKKKHECDICRQTFSKMFELIKHRQIQCRYPLAAEKKQRSRKENEESSAGPIECDQCYKVFKKKRYLDVHKTLHGAPHICHICGAKLTSDYYLKIHIRRHNKEFTEFCEICNKGFYLKANLKTHMSVHTDEKPCTCEICHKSFGNRIYLRSHMKIHIQPETRKKYKCEICSFETFYNYCYKEHMWTHTGENQVACEVCGKLISRQYMKTHIRIHTGEKPEICEFCGKAFSARKCEEIDIEDVKLDSIDELQGIELVQYQNDVSTVEEYDHVGHQEIVMETIEYKTEDSSDKLVSASDIRVIKRVSGHDPSRKRATVYECEICGKQMLKKLQFLKHRQDHERNPKTEGHCEECDKIFDNEEKLRKHMIKAHQKEKPFQCVLCGKCFKTEEFLKIHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNQEYVIHCEICNKGFYTNQTLERHLLTHTGEKPFVCKVCNTAYASAAYLNMHMRSHGEREKHKCNICDFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNECK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01422378;
- 90% Identity
- iTF_00129919;
- 80% Identity
- -