Tpar025886.1
Basic Information
- Insect
- Tetramorium parvispinum
- Gene Symbol
- -
- Assembly
- GCA_011638315.1
- Location
- VBVR01004606.1:4142-7733[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.042 4.9 8.4 0.2 1 20 29 48 29 50 0.94 2 19 0.00012 0.014 16.4 3.0 1 23 67 89 67 89 0.97 3 19 0.00033 0.039 15.0 0.9 2 23 124 145 123 145 0.94 4 19 0.00039 0.045 14.8 2.8 1 23 149 171 149 171 0.97 5 19 0.00013 0.015 16.3 0.8 3 23 179 199 178 199 0.97 6 19 6.4e-06 0.00075 20.4 3.3 2 23 206 227 205 227 0.96 7 19 3.8 4.5e+02 2.2 4.0 1 20 236 255 236 258 0.87 8 19 0.054 6.3 8.0 0.4 3 23 266 285 265 285 0.96 9 19 1.6e-05 0.0018 19.1 0.7 3 23 293 313 292 313 0.98 10 19 0.0086 1 10.5 0.9 1 23 411 433 411 433 0.95 11 19 2.5e-06 0.00029 21.7 0.4 2 23 442 464 442 464 0.96 12 19 9.7e-06 0.0011 19.8 4.7 1 23 470 492 470 492 0.98 13 19 0.054 6.3 8.0 0.4 1 23 496 518 496 518 0.97 14 19 2.2e-05 0.0026 18.7 1.8 2 23 525 546 524 546 0.96 15 19 1.2e-05 0.0015 19.5 0.2 1 23 552 574 552 574 0.98 16 19 0.044 5.2 8.3 0.7 1 23 580 602 580 602 0.97 17 19 6.9e-07 8.1e-05 23.4 0.2 2 23 609 630 608 630 0.97 18 19 7.8e-07 9.1e-05 23.2 0.8 1 23 636 658 636 658 0.98 19 19 1.1e-07 1.3e-05 25.9 1.9 1 23 664 686 664 686 0.99
Sequence Information
- Coding Sequence
- ATGGAAAGGGAAAATCAAAGTGCATCTTTTGTGATTCTTCAAGAAATCGATGACGAAACTATTCTCGTTCAAAAAGTAACCGCGTATCATTGTGATTCATGCAACGAAGATTTTGATACAGAAGCTAGTTTGATAATGCACAGAACGGAGCAATCGATACTTAGAACTCGAGAAGCGTTGCGTCAAgcagaaaaaaaacatgaatgTGATATATGCGGACAGACATTCTCGAAAATGTTGCAATTGATCAAGCATCACCGAGaacattatgaatatttagaCGCACAGAAGAACCAGGACTGGAAAAAGACAGTCACGAAAATTCGGAAGAGTCGAGGGGAGAATAAGGAATCGTCGACAGATTTCATAAAGTGTGACCAGTGtaacaagatatttaaagaaaagagatacTTGAACGTGCACAAAGCGCTGCACAGTGAACCGCACATTTGTCATGTGTGCGGTGCGAAACTGACgtcagattattatttaaagattcaCATGAGGCGACACAATAAGGAATTTACGGAATTCTGCAACGTTTGTAACAAAGGCTTTTATTTAAAGGCAACTTTGAAGACTCACATGAGTGTGCACACCGACGAGAAGCCATGTGCCTGCGAGATTTGTCACAAATCTTTCGGTAATCGAGCTTACCTGCGTAATCATATGAAGATTCACAGTCAGCCCGAGACGAGGAAAAAATTCAAGTGCGAGATATGCAGCTTCGAGACGTTCTATAGCTATTGCTACAAGGAGCATATATGGACTCACACGGGCGAGAGTCAAGTGGCATGTGAAATATGTGGCAAATTAATCAGACGGCAATACATGAAGACTCACATTAGGATGCACACTGGTGAAAAACCAGAGATCTGTGAGTTTTGTGGCAAGGCGTTCAGTGCCAGGACATATCTGGTTAAGCATCGACGAACTCATACTGGTGAAAAGCCTTACAAgtGCGACGAGATTGACATAGAAGACGTAAAGTTGGATTACAAGATCGATGAATTACAAGATATAGAGTTACGATATCAAGATGAAATACCTACAGTGGAAGAGTATCATCACGTTAGAGATAGTTATGGAAGAGTTATGGAAGAGCAAGAAATAGTTACGGAAACGATTGAATGTAGAACTGAAGACTCGAATGAACTGGAATCTGCATCGgaaataaatgtcataaaaCGGACTTCCGAACACGATTCGAGTCGCAAGCGTGCAACAGTTTACGAGTGTGAAATTTGTGGAAAACGAATGTTCAAGAAGGTGCAGTTTTTGAAGCATGAACAAGAGCACAAGGGAAATTCAAACATCGAAGGTCGTTGTGAAGAGTGTGATAAAGTGTTTGACAATGAGGAAAAGTTGCGAAAGCATATGATAAAGGCACACCAAAAAGAGAAACCTTTTCAATGCGTTCTGTGCGGTAAGTGTTTCAAGACCCAGGAGTTCTTGAAGACTCACCTGAAGCAGCACAACAAACGTTTTACCTGCGACATATGTGGCGTGTCAAAAGTTTCCGGATACGACCTGCGTCTGCACAAGAAGAAACATAATCAGGAATATGTGATTCATTGTGAAATCTGCAAGAAGGGTTTTTACACGAATCAAACACTGGAGCGACATTTGCTCACGCACACCGGTGAGAAACCGTTTgtgtgtaaaatatgtaataccCCATATGCGAGTGCAGCGTATCTCAATATGCATATGAAGTCCCatggcgagagagagaagcacAAGTGTAATATCTGCGATTTCGAGAGTTACTGGAAAGCCGCGCTAAAGGTGCATCTTAAGATACACACTGGCGAGAATCAGATCACGTGCGAGGTGTGCGGAAAGTCCGTTAGCAGCAAGACGTACTTGCAAATTCATATGCGTATACATTCGGGCGAGAAACCGCATGTTTGCGAGATGTGTGGCAAGGCGTTCAGCGTACGGAAGTATTTGATTGTACATCTAAGAACTCACACCGGCGAGAGACCTTATGAGTGTAAGGTGTGCCAGAAGAGATTTACGCAACAAGGCTCACTGAATTCACATATGAAGTCTCATAATGAATGcaagtga
- Protein Sequence
- MERENQSASFVILQEIDDETILVQKVTAYHCDSCNEDFDTEASLIMHRTEQSILRTREALRQAEKKHECDICGQTFSKMLQLIKHHREHYEYLDAQKNQDWKKTVTKIRKSRGENKESSTDFIKCDQCNKIFKEKRYLNVHKALHSEPHICHVCGAKLTSDYYLKIHMRRHNKEFTEFCNVCNKGFYLKATLKTHMSVHTDEKPCACEICHKSFGNRAYLRNHMKIHSQPETRKKFKCEICSFETFYSYCYKEHIWTHTGESQVACEICGKLIRRQYMKTHIRMHTGEKPEICEFCGKAFSARTYLVKHRRTHTGEKPYKCDEIDIEDVKLDYKIDELQDIELRYQDEIPTVEEYHHVRDSYGRVMEEQEIVTETIECRTEDSNELESASEINVIKRTSEHDSSRKRATVYECEICGKRMFKKVQFLKHEQEHKGNSNIEGRCEECDKVFDNEEKLRKHMIKAHQKEKPFQCVLCGKCFKTQEFLKTHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNQEYVIHCEICKKGFYTNQTLERHLLTHTGEKPFVCKICNTPYASAAYLNMHMKSHGEREKHKCNICDFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLQIHMRIHSGEKPHVCEMCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNECK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01422378;
- 90% Identity
- iTF_01422378;
- 80% Identity
- -