Cfel008965.1
Basic Information
- Insect
- Camponotus fellah
- Gene Symbol
- -
- Assembly
- GCA_030586385.1
- Location
- JAPIVC010000306.1:2549286-2555967[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.029 6.1 9.0 0.1 1 20 56 75 56 77 0.95 2 19 7e-06 0.0014 20.4 0.4 1 21 94 114 94 115 0.95 3 19 0.00038 0.078 14.9 2.6 2 23 152 173 151 173 0.94 4 19 0.00019 0.04 15.8 2.2 1 23 177 199 177 199 0.97 5 19 9.1e-05 0.019 16.8 0.5 3 23 207 227 206 227 0.97 6 19 3.3e-06 0.00068 21.4 5.4 2 23 234 255 233 255 0.96 7 19 0.76 1.6e+02 4.5 4.5 1 23 264 286 264 286 0.89 8 19 0.13 28 6.9 0.3 3 23 294 313 293 313 0.95 9 19 9.1e-06 0.0019 20.0 0.8 3 23 321 341 320 341 0.98 10 19 0.58 1.2e+02 4.9 0.8 1 22 431 452 431 453 0.72 11 19 1.2e-06 0.00024 22.8 0.3 2 23 462 484 461 484 0.96 12 19 2.1e-05 0.0043 18.9 3.2 1 23 490 512 490 512 0.98 13 19 0.037 7.7 8.6 0.4 1 23 516 538 516 538 0.97 14 19 1.2e-05 0.0025 19.6 1.9 3 23 546 566 544 566 0.96 15 19 5.1e-05 0.011 17.6 0.1 1 23 572 594 572 594 0.98 16 19 0.082 17 7.5 0.9 1 23 600 622 600 622 0.97 17 19 7.7e-07 0.00016 23.4 0.2 2 23 629 650 628 650 0.97 18 19 8.6e-07 0.00018 23.2 0.8 1 23 656 678 656 678 0.98 19 19 1.1e-06 0.00023 22.9 2.1 1 23 684 706 684 706 0.98
Sequence Information
- Coding Sequence
- AtgttaaaagtatataggggAGACTATGATATCTTAGGaaCTCAAAATTGGAGATCTAAAAATCATCTGGGAAATATTGCTATAGAAAGGCAGGATCAAGATGCATCTTTcgttatttttcaagatattgaTAACAAAACTATTCTTGTTCAAGAGGTAGCTGCATATCATTGTGATTCATGCAACGAAGATTTCGATACAGAAGCCAGTTTGATAGTACATAGAACGGAACAATCGATACTTAGAACTCGAGAAGCGTTACGTcaagcagaaaaaaaataccagTGTGACATTTGTGGGCAAACATTTTCCAAAAAACTACAATTGATCAAGCATCGTCAGATGCGATGCAAGTATCCTTTAGAAGCGCAAAAGAAGCGGGAATGGAAAAATACAATCACGAGAATCAAGAGAAATCGAGAAGAGAGTAAAGAATTATCAACAGGTCCCATTGAATGCGACGAGTGTCATAAGATATTCAAGAAGAAGAGATACTTGAACGTACATAAAACGTTGCACGGTGCGCCCCATATTTGCCATGTGTGCGGCGCGAAACTGACGTCGGAATATTATCTAAAGATTCACATCAGGCGACACAATAAGGAATTCAcggaattttgtaatatttgtaataagggTTTCTATTTGAAGGCGACCTTAAAGATTCATATGAGTGTGCATACCGATGAGAAGCCCTGCACTTGCGAGATTTGTCATAAATCCTTCAGCAATCGAGTTTATCTTCGTAGTCACATGAAGATTCACAGTCTGCCTGAGATGAGGAAGAAATACAAGTGCGATATATGCAACTTCGAGACATTTTATAGCTACTGTTACAAAGAGCACATGTGGACTCATACTGGCGAGAGTCAAGTGGCGTGTGAAGTATGTGGGAAGTTAATTAGACGACAATACATGAAGACTCATATTAGAATACATACTGGTGAAAAACCGGAGATTTGTGAATTTTGTGGCAAAGCGTTTAGCGCCAGAAAATATCTGATTAAGCATCGGCGGACACATACCGGCGAGAAACCTTACAAgtGCGAGATCGACATAGAAGACACAAAGCTGGAACCGATCGACGAGTTGCAAGATATACAATTAGTGCGATATCAGGACGAAGTATCTACAGTGGAAGAGTATCATATCAGTCAAGAAATAATTACGGAAACGATCGAATATACGGCCGATGATTCGAATGATAAACTAGAAGATCCTTCAtcgaataaaatagatattataaaacaactTTCTGGACACGAGTCGAGTCGCAAGTGCACGACGGTTTACGAGTGTGAAATTTGTGGAAAGCAAATGCTGAAGAAGCTGCAGTTTTTAAAACACAGACAGGATCACAAGAGGAATCCGAAGACCGAGGATCGTTGCGAAGAATGCGATAAGGTTTTCACGAATGAGGAAAAACTacgaaaacatataataaaggcGCATCAAAAGGAGAAACCATTTCAATGCGTTTTATGCGGCAAGTGTTTCAAGACCGAAGAATTCTTGAAGATTCATCTAAAGCAGCATAATAAACGGTTTACCTGCGATATATGCGGTATCTCAAAGGTCTCTGGATACGATTTGCGTCTGCACAAGAAAAAACACAATCAGGAATACGTGACTCATTGTGACATGTGCGGCAAGGGCTTTTATACAAATCAGACATTGGAGCGTCACTTGCTTACGCATACAGGCGAGAAACCGTTCATCTGTAAGATATGTAACGTTGCATATGCAAGTGCAGCCTATCTCAATATGCATATGAAGTCCCAcggcgagagagaaaaacacaAATGCAATATCTGCAATTTCGAGAGTTATTGGAAGGCCGCATTGAAAGTGCATCTTAAGATACACACGGGCGAAAATCAGATCACATGCGAAGTATGTGGCAAATCTGTAAGCAGCAAAACGTATCTGCAGATTCACATGCGTATACACTCGGGTGAGAAACCGCACGTTTGTGAGATGTGTGGCAAGGCGTTTAGTGTACGAAAGTACCTGATCGTGCATCTGAGAACGCATACCGGCGAAAAACCTTACGAATGTAAGGTGTGTCAGAAAAGATTTACACAGCAGGGTTCATTAAATTCGCATACAAAATCACATAATGAAAGTAAATGA
- Protein Sequence
- MLKVYRGDYDILGTQNWRSKNHLGNIAIERQDQDASFVIFQDIDNKTILVQEVAAYHCDSCNEDFDTEASLIVHRTEQSILRTREALRQAEKKYQCDICGQTFSKKLQLIKHRQMRCKYPLEAQKKREWKNTITRIKRNREESKELSTGPIECDECHKIFKKKRYLNVHKTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCNICNKGFYLKATLKIHMSVHTDEKPCTCEICHKSFSNRVYLRSHMKIHSLPEMRKKYKCDICNFETFYSYCYKEHMWTHTGESQVACEVCGKLIRRQYMKTHIRIHTGEKPEICEFCGKAFSARKYLIKHRRTHTGEKPYKCEIDIEDTKLEPIDELQDIQLVRYQDEVSTVEEYHISQEIITETIEYTADDSNDKLEDPSSNKIDIIKQLSGHESSRKCTTVYECEICGKQMLKKLQFLKHRQDHKRNPKTEDRCEECDKVFTNEEKLRKHIIKAHQKEKPFQCVLCGKCFKTEEFLKIHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNQEYVTHCDMCGKGFYTNQTLERHLLTHTGEKPFICKICNVAYASAAYLNMHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLQIHMRIHSGEKPHVCEMCGKAFSVRKYLIVHLRTHTGEKPYECKVCQKRFTQQGSLNSHTKSHNESK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01422378;
- 90% Identity
- -
- 80% Identity
- -