Trug005569.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Temnothorax rugatulus
Gene Symbol
gfi1b
Assembly
GCA_035220575.1
Location
JASTWL010000046.1:141963-145226[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0038 0.63 12.0 3.7 2 23 443 465 442 465 0.95
2 13 0.00045 0.074 14.9 0.2 1 23 471 493 471 493 0.98
3 13 6.5e-06 0.0011 20.7 2.6 1 23 499 521 499 521 0.96
4 13 2.8e-05 0.0046 18.7 2.9 1 23 530 552 530 552 0.97
5 13 1.6e-05 0.0026 19.5 1.1 1 23 558 580 558 580 0.97
6 13 2.6e-06 0.00044 21.9 1.3 1 23 585 607 585 607 0.98
7 13 0.0051 0.84 11.6 4.0 1 23 614 636 614 636 0.99
8 13 0.0019 0.31 12.9 0.4 2 23 656 677 655 677 0.96
9 13 3.9e-05 0.0065 18.2 0.7 1 23 683 706 683 706 0.97
10 13 0.015 2.5 10.1 1.7 1 23 712 734 712 734 0.96
11 13 0.00029 0.048 15.5 3.3 1 23 740 762 740 762 0.99
12 13 2.4e-05 0.004 18.9 3.6 1 23 768 790 768 790 0.98
13 13 2.5e-05 0.0041 18.8 0.4 1 21 796 816 796 817 0.94

Sequence Information

Coding Sequence
ATGAGAATCGTTTGCGCCGcgttaaattgtaaatattcgTCAGAAAACGAGGATTCGTCGAATGTCACTTTTATCAATTTTGCCAACGATGACACAGCCAAAGTATGCGCGGAATGTTGCGGCAGATCGGATTTAGTCACAAAATCGAATGCGGAATTGCATTTGAATTATTACATTTGTTCTTACCACATTGAAGATCGCTGTTACGTGAGCAAAACTGTTTCCATTGTTTTAAAAGAAGGTACTATTCCTACTTTATTTGGGGCCGACTTGACTACCGATGGtgaaaacttaataaatatgtttgatAAAGCACAGCCTCTCCAACAAGTAGATGATGATGATGTGCCTCTAACGTATTGCGATATGAATGAAATTGAGATAGACGAGTATCATAATATCTCTGTTAGATTTGCCAATTTATGTCGAATCTGTGGCAAATCCATTCTGGATGGAATAGACATCTTTGCAGCCGAGGGCATAGAGCTTAAATTAAAAGAGAGAATAAATTTGCATATGCCTATCACGATTGACATAGACGATTCATTGCCACAGAAAGTATGTACCGATTGCTGTAATAAATTGGAAATTGCACACTCACTAGTCGTTTCATGTCTAAGAACTGATATGCGTTTGAAACATATTCTAAATATTGAGAGAGAGCCGGAGTACGAGAATAAGTACAATGCATTGATTAACGAATGTTCATTAGAGATAGTTGAAGAAATGTACATGGATCTTGATACGCATCCTAATTCATTTACTATAAATAAGATGATAAACTCTGATTCAGAAACAAGTTTGAGAGGATTGGGAAATGGAGAATGTTCTGAAATacagaataataattttcagaGCATTGCGAAGAATGTTGTACCATTAGAACTCAGTACTTTAATCCAAACTAGTAGTAGAGGAGTTAATAGTGAAAGTAACGTAACTATCACGGAAgagatttcaaaaattcaacaaGATAAGATCCAGAATGGAAGCCTTAGCGTTTTATGTCGGCAATGCCAAACTTTTTCTGAAACACAGAAAATATTTgagaatcataaaatattttgtggTAAGGAACAAAATGTCTCTAAACGTGCAGATATGTCTAGAACTGCAGAAAATAAAAGGTCTGGCAGAGACAAGCAGATTAATCACAAAGTAGAAAATTTCCAGACGTGCAACAAAAGATTCGATGGCAAACAAACTATCAATAATGTTGAAAGCTGTGAATCATTACATTGTACTGTTTGCAACCAAACATTCAAATGTCGGCTGGATTATGATAATCATAAATATCTTCATGGAAATCTTATTGAAGTTAATAAAAGATGCGGTCATTGtaaaaaagaatattgtaaCAGAAAAGACTTGGTAATTCATATCATGGAATCGCACGAAGGACGATTATCATTTCAGTGCTCTGCATGCGATAAAACATACGAGAAATGGTCTAGTTTAGATATTCACGAAGCTACTCACAGAATAGATAAACCCTATCTTTGCGATCTGTGCGGAAAAAGCTTTAAGCATTCCAATAATTTAAGAGGGCATAAAAGAATTCATTTGGACGAATCTATAAAGAAAAGACACGTGTGTGAGATCTGTGGCAATGCATTTAGATCACGATTTCATTTGCGGGAACATATGAATCAACACAATGGCAACAGACCTTATTCTTGTGAACAGTGCGGAAAAGCATTTTATAGGAGGATTCAATTGCGACAACACAAATTATTGCATGGCTCTAATAGGCACACATGTCCGATTTGCGGTGCAACATTTAATCGTAAAGGAAATATGAACACACACGTGAAACGGCATAATAACGATAATGGAGGATACACATGCAGCGTTTGCGCCTACAAATGTAAATCCATGAGTGAATTGAAGATACATAGGAAAAAGCATACCGAGGAGGAAATAGTGGACAGTATTAAGAAGAAATGTACCGACAAGGAGATATGGCGTTGTAACATTTGTAGTAAGATGTTCTCGAAACGCGCAATTTTGTTAAATCACGAGCGCGTACATGGAAACGATAAGTTTTATGAATGTGACGAATGTGGCAAGAAATTAGCAAGTAAAAGTTCGCTGATGTATCACAAGAAGTCGATGCATTTGAGAGAGAGGCCACACATGTGCCACTATTGCGGAGATTCGTTTGTTTCGAAAGAGGCACGGCTAATCCACGAAAGGATACATACCGGTGAACGTCCATACGTCTGCAAGGTATGCAACATGCGGTATAGATGCTCCAGTAATCTCAGCCAGCACATGAGGATCCACACGGGTCTGAAGCCACACAAGTGTCATTTTTGCAACAAAGATTTTACGCGCAAAGGCGCGCTAATCGTGCACGAGAGAATCCACACGGGTGTTAAGCCTTATCCTTGTGAGACCTGTGGTAAAAGTTTCTCACAGAAGAATGACATGTTAAAGCACGCTAAACGCGCAACGGCAGATCGATGCAGTGCCAGTGCGGTCGGTGTAACGAGATCTTTAAACGgggaaaaaaatatgttaaagcaTACTGTGGTGCACGAGCAAGATACCTTAGTAATTTCGAATATCAATTCATCAATTCTTCAAGTTTATGTCAATACTAGCGCTTCTtcggaaattaaataa
Protein Sequence
MRIVCAALNCKYSSENEDSSNVTFINFANDDTAKVCAECCGRSDLVTKSNAELHLNYYICSYHIEDRCYVSKTVSIVLKEGTIPTLFGADLTTDGENLINMFDKAQPLQQVDDDDVPLTYCDMNEIEIDEYHNISVRFANLCRICGKSILDGIDIFAAEGIELKLKERINLHMPITIDIDDSLPQKVCTDCCNKLEIAHSLVVSCLRTDMRLKHILNIEREPEYENKYNALINECSLEIVEEMYMDLDTHPNSFTINKMINSDSETSLRGLGNGECSEIQNNNFQSIAKNVVPLELSTLIQTSSRGVNSESNVTITEEISKIQQDKIQNGSLSVLCRQCQTFSETQKIFENHKIFCGKEQNVSKRADMSRTAENKRSGRDKQINHKVENFQTCNKRFDGKQTINNVESCESLHCTVCNQTFKCRLDYDNHKYLHGNLIEVNKRCGHCKKEYCNRKDLVIHIMESHEGRLSFQCSACDKTYEKWSSLDIHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDESIKKRHVCEICGNAFRSRFHLREHMNQHNGNRPYSCEQCGKAFYRRIQLRQHKLLHGSNRHTCPICGATFNRKGNMNTHVKRHNNDNGGYTCSVCAYKCKSMSELKIHRKKHTEEEIVDSIKKKCTDKEIWRCNICSKMFSKRAILLNHERVHGNDKFYECDECGKKLASKSSLMYHKKSMHLRERPHMCHYCGDSFVSKEARLIHERIHTGERPYVCKVCNMRYRCSSNLSQHMRIHTGLKPHKCHFCNKDFTRKGALIVHERIHTGVKPYPCETCGKSFSQKNDMLKHAKRATADRCSASAVGVTRSLNGEKNMLKHTVVHEQDTLVISNINSSILQVYVNTSASSEIK