Tpar009028.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetramorium parvispinum
Gene Symbol
-
Assembly
GCA_011638315.1
Location
VBVR01003155.1:14441-17460[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 4.7 5.5e+02 1.9 0.6 3 19 324 340 323 343 0.87
2 15 1.5 1.8e+02 3.5 2.1 2 23 396 417 395 417 0.89
3 15 0.0028 0.33 12.0 4.7 2 23 426 448 425 448 0.93
4 15 4.2e-05 0.005 17.8 0.5 1 23 454 476 454 476 0.98
5 15 4.8e-06 0.00056 20.8 2.6 1 23 482 504 482 504 0.96
6 15 3.6e-05 0.0042 18.0 2.9 1 23 513 535 513 535 0.97
7 15 4.2e-06 0.0005 20.9 1.5 1 23 541 563 541 563 0.98
8 15 4.5e-06 0.00053 20.8 3.9 1 23 568 590 568 591 0.95
9 15 0.0074 0.87 10.7 4.5 1 23 596 618 596 618 0.99
10 15 0.0045 0.52 11.4 0.2 2 23 638 659 637 659 0.96
11 15 4.8e-05 0.0057 17.6 1.5 1 23 664 687 664 687 0.97
12 15 0.0003 0.035 15.1 1.7 1 23 693 715 693 715 0.96
13 15 0.00023 0.027 15.5 3.6 1 23 721 743 721 743 0.98
14 15 9.7e-06 0.0011 19.8 4.1 1 23 749 771 749 771 0.98
15 15 9.8e-06 0.0011 19.8 0.3 1 22 777 798 777 798 0.95

Sequence Information

Coding Sequence
ATGAGAATCGTTTGCGCCGccttaaattgtaaatatgcgTCAAAAAACGAGGATTCGTCGAGTGtcacttttatcaattttcccAATGATGACacAGCCAAAGTATGGGCAGAATGTTGCGGCAGATCAGATTTAGTCACAAAATCGAATGCAGAATTGCATTcgaattattacatttgttcTCACCACATTGAAGATCGCTGTTACGTGAGCAAAACTGTTCCTGTTGTTCTAGAAGAAGGTACTATTCCTACTTTATTTAGGACCGACAGTGAAAACTcaataaatatgtttgataAAGCACAGCACCTCCAAGTAGTAAGTGTGCCTCTAACATATTGCGATATGAATGTCGAGATAGACGAGTATCACAATATCTCTGTTAGATTTGCCAATTTATGTCGAATCTGTGGCAAATCCACTCTGGATGGAATAGACATTTTTGCAGCCGAGGGTATAGAACTTAaattgaaagagagaataaactTGCATATGCCTATCTCAATCGATATAAACGATACATTGCCACAGAAAGTATGTACCGTTTGCTGtaataaattggaaattgCACACTCGCTAGTCGTTTCATGTCTAAGAACTGATATGCGTTTGAAGCAGATTCTAAATATTGAGAGGGAGCCAGAATACGAGAACAAGTACAATGCATTGATTGACGAATGCTCATTAGAGATAGTTCAAGAAATGTGTATGGATCATAATACGCATCCCAATTcatttactataaataaaatgataaactcTGATTCAGAAAGTTTAAGAGGATTAGGAAATGGAGAATGTTCTGAAAtactgaataataattttcagagcATCGCGAAGAGTGTTGTGCCATTAGAATTCGGCACACTAATCCAAACTTGTAGAGAAGTTAACAGTAAAAGTAACGCGACTGTCGCGGaagaaataattcaacaaGACAAGGTTCAAAATGGAAGCTCCAGCGTTTTATGTCAACAATGCCAAACTTTTTTTGAAAcacagaaaatatttgagaatcataagatattttgtaataagaaGGAAAATGTCTCTAAACATATAGATATGTCTAGAACTGTAGAAAATAGAAGATCTGGCAAAAGCAAGATTAATTGCGAAATAGAAAATTCGCAGACATGTAAAAGAGTGGATGGCAAACAAGTTAGCGATAATGTTGAATCAGTGTATTGTACTGTTTGCAATCAAGCATTCAAATGTCAACAGGATTACGATAATCACAGATATCTTCATGGAAATCTtgttgaaatgaataaaagatgCGGGCATTGTACAAAAGtatattgtaacaaaaaaGACTTGTTAACTCATATCACGGAATCACATGAGggacgattattatttaagtgcTCTACATGTGATAAAACATACGAAAAATGGTCTAGTTTAGATATTCACGAAGCTACTCACAGAATAGACAAGCCCTATCTTTGCGATCTGTGCGGAAAAAGCTTCAAGCATTCCAATAATTTACGAGGTcataaaagaattcatttgGACGAATCTATAAAGAAAAGACATGTGTGTGAGGTCTGTGGCAATGCGTTTAGATCACGATTTCATTTGCGGGAACATATGAATCAACACGATGACAACAAACCTTATTCTTGCGAACAGTGCGGGAAAGCCTTTTACAGGAAGATTCAATTGCGGCAACACAAATTATCGCATGGCTCTAATAAGCACACATGTCCGATTTGCGGTACAACATTTAATCGTAGAGGGAACATGAATACCCACGTGAAACGGCATCATAACGATGGAGGATATACATGCAGTgtTTGCGCTTACAAATGTAAATCCATGAGCGAATTAAAGATGCATAGAAAAAAGCATACCGAGGAGGAAATAATGGACAGCATTAAGAAGAAGTGTACCGACAAGCAGATATGGCGTTGTGACATTTGTAATAAGATATTCCCGAAACGCactattttgttaaatcacgAGCGCATACATGACGATAAGTTTTACAAGTGTGACGAATGtgacaaaaaattagcaaGTAAAAGTTCGCTGATGTATCACAAGAAATCGATGCATTTGAGGGAAAGGCCGCACATGTGTCACTATTGCGGAGAGTCCTTCGTTTCGAAAGAGGCACGGCTGATTCACGAGAGGATACATACCGGTGAACGGCCGTACATCTGCAAAGTATGTAACATGCGGTTCAGATGCTCCAGTAATCTCAGCCAGCACATGAAGATCCACACGGGTCTAAAGCCACATAAGTGCCATTTTTGTAACAAAGGTTTTACGCGCAAGGGCGCGCTAACCGTGCACGAGAGAATCCACACGGGTGTTAAGCCTTATCCTTGTGAGACCTGTGGTAAAAGCTTCTCACAGAAGAATGACATGTTGAAGCATGCCAGACGCGCAACGGCAGATCGATGCAGCATGGCTGGTGTAACGAGATCTTTAAATCTCGAAAAAAGACTGTAG
Protein Sequence
MRIVCAALNCKYASKNEDSSSVTFINFPNDDTAKVWAECCGRSDLVTKSNAELHSNYYICSHHIEDRCYVSKTVPVVLEEGTIPTLFRTDSENSINMFDKAQHLQVVSVPLTYCDMNVEIDEYHNISVRFANLCRICGKSTLDGIDIFAAEGIELKLKERINLHMPISIDINDTLPQKVCTVCCNKLEIAHSLVVSCLRTDMRLKQILNIEREPEYENKYNALIDECSLEIVQEMCMDHNTHPNSFTINKMINSDSESLRGLGNGECSEILNNNFQSIAKSVVPLEFGTLIQTCREVNSKSNATVAEEIIQQDKVQNGSSSVLCQQCQTFFETQKIFENHKIFCNKKENVSKHIDMSRTVENRRSGKSKINCEIENSQTCKRVDGKQVSDNVESVYCTVCNQAFKCQQDYDNHRYLHGNLVEMNKRCGHCTKVYCNKKDLLTHITESHEGRLLFKCSTCDKTYEKWSSLDIHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDESIKKRHVCEVCGNAFRSRFHLREHMNQHDDNKPYSCEQCGKAFYRKIQLRQHKLSHGSNKHTCPICGTTFNRRGNMNTHVKRHHNDGGYTCSVCAYKCKSMSELKMHRKKHTEEEIMDSIKKKCTDKQIWRCDICNKIFPKRTILLNHERIHDDKFYKCDECDKKLASKSSLMYHKKSMHLRERPHMCHYCGESFVSKEARLIHERIHTGERPYICKVCNMRFRCSSNLSQHMKIHTGLKPHKCHFCNKGFTRKGALTVHERIHTGVKPYPCETCGKSFSQKNDMLKHARRATADRCSMAGVTRSLNLEKRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01408479;
90% Identity
iTF_01421727;
80% Identity
iTF_01422982;