Sinv003817.1
Basic Information
- Insect
- Solenopsis invicta
- Gene Symbol
- -
- Assembly
- GCA_016802725.1
- Location
- NC:2937998-2944658[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.8 5.9e+02 0.9 0.1 3 10 140 147 139 149 0.88 2 15 7.1 6.2e+02 0.9 0.3 3 12 381 390 380 393 0.85 3 15 0.0047 0.41 10.9 2.3 3 23 436 457 435 457 0.93 4 15 9.7e-05 0.0086 16.2 0.7 1 23 463 485 463 485 0.98 5 15 3.6e-06 0.00031 20.7 2.6 1 23 491 513 491 513 0.96 6 15 1.5e-05 0.0013 18.7 2.9 1 23 522 544 522 544 0.97 7 15 2e-05 0.0017 18.3 1.5 1 23 550 572 550 572 0.98 8 15 6.8e-07 6e-05 23.0 2.2 1 23 577 599 577 599 0.97 9 15 0.0028 0.24 11.6 4.0 1 23 606 628 606 628 0.99 10 15 8.9e-06 0.00078 19.4 0.5 2 23 648 669 647 669 0.97 11 15 1.6e-05 0.0014 18.6 0.8 1 23 675 698 675 698 0.97 12 15 0.013 1.1 9.5 1.6 1 23 704 726 704 726 0.96 13 15 0.00075 0.066 13.4 3.1 1 23 732 754 732 754 0.98 14 15 6e-05 0.0053 16.8 2.0 1 23 760 782 760 782 0.98 15 15 1.3e-05 0.0012 18.9 0.4 1 21 788 808 788 809 0.94
Sequence Information
- Coding Sequence
- ATGAGAATTGTTTGCGCTGCGTTAAATTGCAAGTATTCCTCGGAAAGCGAGGATTCATCGAACGTCACTTTCATCAATTTTCCTAACAATGATGCAGCCAAGATCTGGGCAGAATGCTGCGGCAGATCGGATTTAGCGGCAAAGTCGAATGCGGAATTACATTTGAGTTATTACATTTGTTCTCACCACATTGAAGACCGATATTACGTGAGCAAAGCTGATCCTGTTATTATGGAAGAAGGTACCATTCCTACTTTATTTGGCACTGACTTGACTGCTGATGGTGAAGATTCAATAATTATGTTTGATAAGACGCAGCATCTGCAAGAAGTAGGCGACGGTACGTCTCTAACCTATTGCGATATGAACGTCGAGATAGACGAttatcacaatatttctgtaagATTCGTCAATTTATGTCGAATCTGTGGCAAATCCACTATGGATGGAATAGACATCTTTGCAGCCAAGGGCatagaaatgaaattaaaagagaGGATAAATTTGCACATGCCCATCTCGATTGATATAGATGACTCGTTGCCGCAGAAGGTGTGTACCGATTGCTGTGACAAGTTGGAAATTGCGCACTCATTAGTCGTTTCATGTCTAAGAACCGACATGCGTTTAAAACAACTTCTAAATATCGAGAGAGAGCCAGAATATGAGAACAAGTACAATGCATTGATTGATGAATGTTCATTAGAGATAGGTCGAGAAATGTGTATGGATGAAAATACACATTCTAATCTATTTACTGCAAATAAGATGATAAATTCTAATTCAGAAACGAATTTGAGAGGATTGGGAAATAGCGAATGTTCTGAAATACGGAATAATAATTTCCAAAGCATTGGTAAGAATGTTGTGTCCTTAGAACTTGGTACTCTGATCCAAACTTGTAACGACAAAAGTAACGCGACTATCGCGGAAGAACTAGCAAAAGTTCAACAAATCCAAAATGAAAGTCTTAGCATTTTATGTCTTCAGTGCCAAACTCTGTGTGAAACACAGGAAATTTTTgagaatcataaaatattttgtaataaggaGCAAAATGTCTCTGGTCACATAGATACGTTTAGAACTAAGAAAAACGGAAAGTATGAGAGTAAGCACATTAATGACACTGAAGAAAATTGTCAGACATGCAACGAAAAATTTGATAGCGAGCaagttatcaataatattaaaagccaTGATTCAATCCGCTGTACTGAATCTCGCAACCAAACATTCAAATGTCGGCAGGTCTACGATAATCACAAATATTTTCATGGAGATCTTactgaagtaaataaaatatgtggTCATTGTAAAAAGGCTTATCACAATAAGAAGGACTTGTTGGTTCATATCACAGAATCGCACAAGGGTCGATTATTATTCAAGTGTTTTACATGCGATAAAACGTACGAGAAATGGTCAAGTTTGGATATTCACGAGGCCACTCACAGAACAGATAAGCCCTATCTTTGTGATCTATGCGGGAAAAGTTTTAAGCATTCCAACAATTTAAGAGGACATAAAAGAATTCATTTGGACGAGTCCGTAAAGAAGAGACACGTGTGTGAAATTTGTGGCAACGCATTTAGATCACGCTTTCACTTGCGGGAGCATATGAATCAACACGATGACAATAGACCATATTCCTGCGAGCAGTGCGGGAAAGCCTTCTACAAGAGGATTCAATTGCGACAACACAAATTATCGCATGGATCTAATAAGCACATGTGTTCGATTTGCGGTACAACGTTTAATCGTAGAGGGAACATGAACGCGCATATGAAACGGCATAGTAATGATAATGAAGGATATACATGCAGTGTTTGTGCCTACAAATGTAAATCTATGAGCGAATTGAAGATACACAGGAAGAAGCATACCGAGGAGGAAATAGTGGACAGTATCAAGAGGAAATGTACCGACAAGGAGATATGGCGTTGTaacatttgtaacaaaatattttcgaaaCGCGCTACTCTGTTAAATCACGAACGCGTGCACGGAGACGACAAGTTTTACGAGTGCGACGAATGCGGCAAAAAATTAGCAACTAAGAGCTCGCTGATGTATCACAAGAAGTCGATGCATCTGAGGGAGAGGCCGCACATGTGTCATTATTGCGGAGACTCGTTCGTTTCGAGAGAGGCGCGGCTGATTCACGAGAGGATACACACTGGTGAACGTCCATACGTCTGCAAGGTGTGCAATATGCAATACAGATGCTCCAGCAATCTTAGCCAGCATATGAAGATCCACACAGGTCTGAAGCCGCACAAGTGTCGCTTTTGCAATAAAGATTTTGCGCGCAAAGGCACGTTAATTGTACACGAGAGAATCCACACGGGCGTTAAGCCTTATCCTTGCGAAACCTGTGGTAAGAGCTTCTCACAGAAAAATGACATGTTGAAGCACGCCAAACGCACGACGGCAGATCGATGTGGCGCGACCAGGTCAATAAGATcgttaaacaaaaagaaaaatatgttgaaGCATTCCGCGGTGCATGAACAAGATGTCTTAACAATTTCGAATGTCAATTCATCACATATTCTTCAGGTTTACGTCAATACTAGTGCCTCTTCGGAAACTAAGTAA
- Protein Sequence
- MRIVCAALNCKYSSESEDSSNVTFINFPNNDAAKIWAECCGRSDLAAKSNAELHLSYYICSHHIEDRYYVSKADPVIMEEGTIPTLFGTDLTADGEDSIIMFDKTQHLQEVGDGTSLTYCDMNVEIDDYHNISVRFVNLCRICGKSTMDGIDIFAAKGIEMKLKERINLHMPISIDIDDSLPQKVCTDCCDKLEIAHSLVVSCLRTDMRLKQLLNIEREPEYENKYNALIDECSLEIGREMCMDENTHSNLFTANKMINSNSETNLRGLGNSECSEIRNNNFQSIGKNVVSLELGTLIQTCNDKSNATIAEELAKVQQIQNESLSILCLQCQTLCETQEIFENHKIFCNKEQNVSGHIDTFRTKKNGKYESKHINDTEENCQTCNEKFDSEQVINNIKSHDSIRCTESRNQTFKCRQVYDNHKYFHGDLTEVNKICGHCKKAYHNKKDLLVHITESHKGRLLFKCFTCDKTYEKWSSLDIHEATHRTDKPYLCDLCGKSFKHSNNLRGHKRIHLDESVKKRHVCEICGNAFRSRFHLREHMNQHDDNRPYSCEQCGKAFYKRIQLRQHKLSHGSNKHMCSICGTTFNRRGNMNAHMKRHSNDNEGYTCSVCAYKCKSMSELKIHRKKHTEEEIVDSIKRKCTDKEIWRCNICNKIFSKRATLLNHERVHGDDKFYECDECGKKLATKSSLMYHKKSMHLRERPHMCHYCGDSFVSREARLIHERIHTGERPYVCKVCNMQYRCSSNLSQHMKIHTGLKPHKCRFCNKDFARKGTLIVHERIHTGVKPYPCETCGKSFSQKNDMLKHAKRTTADRCGATRSIRSLNKKKNMLKHSAVHEQDVLTISNVNSSHILQVYVNTSASSETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01408479;
- 90% Identity
- iTF_01354782;
- 80% Identity
- -