Veme011985.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vollenhovia emeryi
Gene Symbol
-
Assembly
GCA_000949405.1
Location
NW:441215-450163[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00013 0.0098 15.9 1.3 2 23 430 452 429 452 0.95
2 13 3.4e-05 0.0026 17.7 0.5 1 23 458 480 458 480 0.98
3 13 2.5e-06 0.00019 21.3 3.4 1 23 486 508 486 508 0.96
4 13 7.7e-05 0.006 16.6 5.0 1 23 517 539 517 539 0.97
5 13 5.3e-06 0.00041 20.3 1.4 1 23 545 567 545 567 0.98
6 13 3.9e-07 3e-05 23.8 1.6 1 23 572 594 572 594 0.98
7 13 0.0019 0.15 12.2 4.0 1 23 601 623 601 623 0.99
8 13 7e-05 0.0054 16.7 0.1 2 23 643 664 642 664 0.97
9 13 6.5e-06 0.0005 20.0 0.8 1 23 670 693 670 693 0.98
10 13 0.0089 0.68 10.1 1.7 1 23 699 721 699 721 0.96
11 13 0.00078 0.06 13.4 4.1 1 23 727 749 727 749 0.98
12 13 7.8e-06 0.0006 19.7 4.1 1 23 755 777 755 777 0.98
13 13 1.9e-05 0.0015 18.5 0.4 1 21 783 803 783 804 0.93

Sequence Information

Coding Sequence
ATGAGACTCGTTTGCGCCGCATTAAATTGCAGGTATTCGTCAGAAAGTGAGGATTCGTCGAATGTcagttttatcaattttcccaACGATGACACAGCTAAAGTATGGGCGGAATTTTGCGGCAGATCGGATTTGGTCGCCAAGTCGAATGCAGAGTTGCATTCGAATTATTACGTTTGCTCCCACCACATTGAAGATCACTGTTACGTGAGCAAAATTGTTCCTGTCGTTCTAGAGGAAGGTACCGTTCCTACTTTATTTAGGACCGACCTGACTACCGACGGCGAAAGCTCGATAAATATGTTTGACAAAGAGCAGCATCTCCATCAAGTAGACGATGGTGTGCCTCGAACGTACTGTGATATGAGTGTCAACGAGCTAGACGAGTATCATAATATCTCTGTTAGATTTTCTAATTTATGTCGAATCTGTGGCAAGTCCACTCTCGATGGAATAGACGTATTTGCTGCCGAGGGTATAGCCCTTAAATTAAAAGAGAGGATAAATTTGCATCTGCCCATCTCAATTGACATAGACGATTCATTGCCACAGAAAGTGTGTACCGATTGCTGTAATAAGTTGGAAGTTGTACACTCGCTAGTCGTTTCATGCCTGAGAACTGATATGCGTTTGAAACGGATTCTAAATGTCGAGAGAGAGCCAGAATACGAGACCAAGTACAATGCGTTGATTGACGAATTAGAGATAAGTTCATTGGGGATAAGTTCATTAGAGATAATTCAAGAAATGTATATGAATCATAATACGCATTCTAATTCGTTCACTATAAATAAGATGATAAACTCCGATTCAGAAATAAGTTTGAGAGGATTGGGAAATGGAGAATCTTCTGAAATACAGAATAATCATTTTCAGAACATGGCGAAGAGTATTGTGCCATTAGAACTTGGCACGCTGATCCAAACTTGTAGACAAATTAACTGCAAAAGTAACCTGACCGTTACGGAAGAAATATCAAAAGTTCAAGATAAGACCCAGAATGGAAGTCCTGACGTTTTATGTCAGCAGTGCCAAACTTTTTGTGAAACACaggaaatatttgaaaatcataaaatattttgtagtaAGCAACAAAATGTCTCCAAACATGATATGTCTATAACTACAGAAAGTGGAAGGTCTATAACGTGCAACGAAAGGTTCCAAGTTATCGATAATGTTAAAAGCTGTGAATCAGTACATTGTACTGTTTGCAACCAATCGTTCAAATGCCAGCAGGATTATGATAATCACAAATGCCTTCATACTAATCTTGAAGTAGATAAAAGATGCGGTCATTGCGAGAAAGTATATCGCAATAGAAAAGACTTGTTAATTCATATCATGGAATCGCACGGGGGACGGTTATCATTTAAGTGCTCTACGTGCGATAAAACTTACGAGAAATGGTCTAGTTTAGATATTCACGAAGCTACTCACAGAACAGATAAGCCTTATCTGTGCGATCTGTGTGGAAAAAGCTTCAAACATTCCAATAATTTAAGAGGTCACAAAAGAACTCATTTGGACGAATCTATAAAGAAGAGGCACGTGTGCGAGATATGTGGCAATGCGTTTAGATCACGATTTCATTTGCGGGAACATATGAATCATCATGATGGCAACAGACCATATTCTTGTGAACAGTGCGGGAAAGCCTTCTACAGGAGGATTCAATTGCGACAACACAAGTTATCTCATGGCTTCAATAGACACACATGTCCGATTTGCGGTGCGACATTTAATCGTAGAGGAAACATGAACACACACATGAAACGGCATAATAACGATAGTGGAGGCTATACATGCAGCGTTTGCGCATACAGATGTAAAACCATGAGCGAATTAAAGATACATAGGAAAAAGCATACCGAGGAGGAAATAGCGGACAGTATTAAGAAGAAATGTAACGACAAGGAGATATGGCGTTGTGACATTTGCAGTAAGATATTCCCGAGACGCGCTGTCTTGTTAATTCACCAGCGCGTACACGGAGACGATAAGCTTTACGAATGTGACGAATGTGGCAAGAAATTAGCAAGTAAAAGTTCGCTGACGTATCACAAGAGGTCGATGCATTTGAGGGAGAGGCCGCACATGTGCCACTATTGCGGAGACTCGTTCGTCTCGAAAGAGGCACGGCTGATCCACGAGAGGATACACACCGGTGAACGCCCATATAGCTGTAAGGTGTGCAACATGCGGTACAGATGCTCCAGCAATCTCAGCCAGCACATGAAGATCCACGCGGGTCTGAAGCCACACAAGTGCCATTTCTGCAACAAAGGTTTTACGCGTAAAGGTGCGCTAACCGTCCACGAAAGAATCCACACGGGTGTTAAGCCTTTCCCTTGCGAGACTTGTGGTAAAAGCTTCTCGCAGAAGAATGACATGTTAAAGCACGCAAAACGTGCAACGGCGGATCGATGCGGCGCGGCTGGTCTAACGAGATctttaaacgaaaaaaatacGTCAAAGCGTACTGCAGTGCACGAACAAGATAACTTggcaatttcaaatattaatttatcacaTTCTTCAAGTTTATGTCAATATTAA
Protein Sequence
MRLVCAALNCRYSSESEDSSNVSFINFPNDDTAKVWAEFCGRSDLVAKSNAELHSNYYVCSHHIEDHCYVSKIVPVVLEEGTVPTLFRTDLTTDGESSINMFDKEQHLHQVDDGVPRTYCDMSVNELDEYHNISVRFSNLCRICGKSTLDGIDVFAAEGIALKLKERINLHLPISIDIDDSLPQKVCTDCCNKLEVVHSLVVSCLRTDMRLKRILNVEREPEYETKYNALIDELEISSLGISSLEIIQEMYMNHNTHSNSFTINKMINSDSEISLRGLGNGESSEIQNNHFQNMAKSIVPLELGTLIQTCRQINCKSNLTVTEEISKVQDKTQNGSPDVLCQQCQTFCETQEIFENHKIFCSKQQNVSKHDMSITTESGRSITCNERFQVIDNVKSCESVHCTVCNQSFKCQQDYDNHKCLHTNLEVDKRCGHCEKVYRNRKDLLIHIMESHGGRLSFKCSTCDKTYEKWSSLDIHEATHRTDKPYLCDLCGKSFKHSNNLRGHKRTHLDESIKKRHVCEICGNAFRSRFHLREHMNHHDGNRPYSCEQCGKAFYRRIQLRQHKLSHGFNRHTCPICGATFNRRGNMNTHMKRHNNDSGGYTCSVCAYRCKTMSELKIHRKKHTEEEIADSIKKKCNDKEIWRCDICSKIFPRRAVLLIHQRVHGDDKLYECDECGKKLASKSSLTYHKRSMHLRERPHMCHYCGDSFVSKEARLIHERIHTGERPYSCKVCNMRYRCSSNLSQHMKIHAGLKPHKCHFCNKGFTRKGALTVHERIHTGVKPFPCETCGKSFSQKNDMLKHAKRATADRCGAAGLTRSLNEKNTSKRTAVHEQDNLAISNINLSHSSSLCQY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01408479;
90% Identity
iTF_01520320;
80% Identity
iTF_01520320;