Tbic008811.1
Basic Information
- Insect
- Tetramorium bicarinatum
- Gene Symbol
- -
- Assembly
- GCA_011636605.1
- Location
- VBVP01002038.1:12108-15204[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.047 6.4 8.0 0.7 3 20 321 338 320 339 0.95 2 14 2.2 3e+02 2.7 2.2 2 23 393 414 392 414 0.85 3 14 0.00067 0.092 13.8 4.8 2 23 423 445 422 445 0.95 4 14 4.9e-05 0.0067 17.4 0.5 1 23 451 473 451 473 0.98 5 14 3.9e-06 0.00053 20.8 2.6 1 23 479 501 479 501 0.96 6 14 4.8e-06 0.00065 20.6 1.4 1 23 510 532 510 532 0.98 7 14 5.5e-06 0.00075 20.4 1.4 1 23 538 560 538 560 0.98 8 14 4.6e-06 0.00062 20.6 2.7 1 23 565 587 565 588 0.95 9 14 0.0031 0.42 11.7 4.0 1 23 593 615 593 615 0.99 10 14 0.0034 0.47 11.6 0.1 2 23 635 656 634 656 0.96 11 14 0.00019 0.026 15.5 1.5 1 23 661 684 661 684 0.97 12 14 0.00024 0.033 15.2 1.7 1 23 690 712 690 712 0.96 13 14 0.00019 0.026 15.5 3.6 1 23 718 740 718 740 0.98 14 14 8e-06 0.0011 19.8 4.1 1 23 746 768 746 768 0.98
Sequence Information
- Coding Sequence
- ATGAGAATCATTTGCGCCGcgttaaattgtaaatattcgtCAAAAAACGAGGATTCGTCGAGTGTcacttttatcaattttcccAATGATGACAcAGCTAAAGTATGGGCAGAATGTTGCGGCAGATCAGATTTAGCCACAAAATCGAATGCGGAATTGcattcaaattattacatttgttcTCACCACATTGAAGATCGCTGTTACGTGAGCAAAACTGTTCCTGTTGTTTTAGAAGAAGGTACTATTCCTACTTTATTTAAGACTGACAgtgaaaacttaataaatatgtttgctAAAGCACAGCATCCCCAAGAAGTAGGTGTGCCTCTAACATATTGCGATATGAATGTCGAGATAGACGAGTATCACAATATCTCTGTTAGATTTGTCAATTTATGTCGGATTTGTGGCAAATCCACTCTGGATGGAGTAGACATCTTTGCAGCCGAGGGTATAGAACTTAAattgaaagagagaataaatttgcatatgcCTATCTCAATCGATATAAACGATACATTGCCACAAAAAGTGTGTACCGATTGCTGtaataaattggaaattacACACTCACTAGTCGTTTCATGTCTAAGAACTGATATGCGTTTGAAGCagattctaaatattgaaagagaGCCAGAATACGAGAATAAGTACAATGCATTGATTGACGAATGCTCATTAGAGATAGTTCAAGAAATGTGTATGGATCATAATACGCATCCTAATTCgtttactataaataaaatgataaactcTGATTCAGAAAGTTTAAGAGGAAGTGGAGAATGTTCTGAAAtactgaataataattttcagagcATCGCGAAGAGTGTTGTGCCATTAGAATTCGGCACACTAATCCAAACTTGTAGAGAAGTTAACAGTAAAAGTAACACGACTGTCACAGAAATAATTCAACAAGACAAGGTCCAAAATGGAAACTCCAGCGTTTTATGTCAACAATGCCAAACTTTTTTTGAAACACAGGAAACATTTCAGAATCAtaagatattttgtaataaagaggaaaatgtctctaaacatatatatatgtctagaaccatagaaaatagaaaatctggCAGAAGCAAGATTAATTGCGAAATGGAAAATTCGCAGACATGTAAAAGATTGGATGGCAAACAAGTTAGCGATAACATTGAATCGGTGTATTGTACCGTTTGCAATCAAGCATTCAAATGTCAGCAGGATTATGATAATCACAAATATCTTCATGGAAATCTTGTTGAAGTGAATACAAGATGTGGGCATTGTACGAAAgtatattgtaacaaaaaagACTTGTTAACTCATATCAAGGAATCACATGAGGGACGATTATTATTTAGGTGCTCTACATGCGATAAAACATATGAAAAATGGTCTAGTTTAGATATTCACGAAGCTACTCACAGAATAGACAAGCCCTATCTTTGCGATCTATGCGGAAAAAGCTTCAAGCATTCCAATAATTTACGAGGTCATAAAAGAATTCATTTGGATGAAtctataaagaaaagatacgTGTGTGAGGTCTGTGGCAATGCGTTTAGATCACGATTTCATTTGCGGGAACATATGAATCAACACGATGACAACAAACCTTATTCTTGCGAACAGTGCGGGAAAGCCTTTTACAGGAGGATTCAATTGCGGCAACACAAATTATCGCATGGCTCTAATAAGCACACATGTCCGATTTGCGGTGCATCGTTTAATCGTAGAGGGAACATGAATACCCACGTGAAACGGCACCATAACAATGGAGGATATACATGCAGTgtTTGCGCTTACAAGTGTAAATCCATGAGCGAATTAAAGATACATAGAAAAAAGCATACCGAAGAGGAAATAATGGACAGCATTAAGAAGAAATGTACCGACAAGGAGATATGGCGTTGTGACATTTGTAACAAGATATTCCCGAAACGCgctattttgttaaatcacGAGCGCATACAcgacgataaattttataaatgtgacgaatgtgacaaaaaattagcaagtAAAAATTCGCTGATGTATCACAAGAAGTCGATGCATTTGAGGGAGAGGCCGCACATGTGTCACTATTGCGGAGAGTCGTTCGTTTCGAAAGAGGCACGGCTGATCCACGAGAGGATACATACCGGTGAACGGCCGTATATCTGCAAAGTATGCAACATGCGGTTCAGATGCTCCAGTAATCTCAGCCAGCACATGAAGATCCACACGGGTCTAAAGCCGCACAAGTGCCATTTTTGTAACAAAGGTTTTACGCGCAAGGGCGCGCTAACCGTGCACGAGAGAATCCACACGGGTGTTAAGCCTTATCCTTGTGAGACCTGTGTTTATATCAATACTAATGCCTCTTTggaaattaagtaa
- Protein Sequence
- MRIICAALNCKYSSKNEDSSSVTFINFPNDDTAKVWAECCGRSDLATKSNAELHSNYYICSHHIEDRCYVSKTVPVVLEEGTIPTLFKTDSENLINMFAKAQHPQEVGVPLTYCDMNVEIDEYHNISVRFVNLCRICGKSTLDGVDIFAAEGIELKLKERINLHMPISIDINDTLPQKVCTDCCNKLEITHSLVVSCLRTDMRLKQILNIEREPEYENKYNALIDECSLEIVQEMCMDHNTHPNSFTINKMINSDSESLRGSGECSEILNNNFQSIAKSVVPLEFGTLIQTCREVNSKSNTTVTEIIQQDKVQNGNSSVLCQQCQTFFETQETFQNHKIFCNKEENVSKHIYMSRTIENRKSGRSKINCEMENSQTCKRLDGKQVSDNIESVYCTVCNQAFKCQQDYDNHKYLHGNLVEVNTRCGHCTKVYCNKKDLLTHIKESHEGRLLFRCSTCDKTYEKWSSLDIHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDESIKKRYVCEVCGNAFRSRFHLREHMNQHDDNKPYSCEQCGKAFYRRIQLRQHKLSHGSNKHTCPICGASFNRRGNMNTHVKRHHNNGGYTCSVCAYKCKSMSELKIHRKKHTEEEIMDSIKKKCTDKEIWRCDICNKIFPKRAILLNHERIHDDKFYKCDECDKKLASKNSLMYHKKSMHLRERPHMCHYCGESFVSKEARLIHERIHTGERPYICKVCNMRFRCSSNLSQHMKIHTGLKPHKCHFCNKGFTRKGALTVHERIHTGVKPYPCETCVYINTNASLEIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01408479;
- 90% Identity
- iTF_01421612; iTF_01422982; iTF_01423844; iTF_01423721; iTF_01423093; iTF_01422393; iTF_01422280;
- 80% Identity
- iTF_01421612;