Basic Information

Insect: Tetramorium immigrans
Gene Symbol: gfi1b
Assembly: GCA_011636585.1
Location: VBVO01007185.1:3378-6464[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4 5e+02 2.1 0.3 3 19 323 339 322 341 0.86

2 15 2.6 3.2e+02 2.7 2.2 2 23 395 416 394 416 0.85

3 15 0.0019 0.24 12.5 4.3 2 23 425 447 424 447 0.93

4 15 2.4e-05 0.0029 18.5 0.6 1 23 453 475 453 475 0.98

5 15 4.6e-06 0.00057 20.8 2.6 1 23 481 503 481 503 0.96

6 15 3.5e-05 0.0044 18.0 2.9 1 23 512 534 512 534 0.97

7 15 6.4e-06 0.00079 20.3 1.4 1 23 540 562 540 562 0.98

8 15 6.5e-06 0.00081 20.3 2.9 1 23 567 589 567 590 0.95

9 15 0.0067 0.84 10.8 4.3 1 23 595 617 595 617 0.99

10 15 0.0096 1.2 10.3 0.4 2 23 637 658 636 658 0.95

11 15 4.6e-05 0.0058 17.6 1.5 1 23 663 686 663 686 0.97

12 15 0.00028 0.035 15.1 1.7 1 23 692 714 692 714 0.96

13 15 0.00022 0.027 15.5 3.6 1 23 720 742 720 742 0.98

14 15 9.3e-06 0.0012 19.8 4.1 1 23 748 770 748 770 0.98

15 15 1.7e-05 0.0022 18.9 0.4 1 21 776 796 776 797 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4	5e+02	2.1	0.3	3	19	323	339	322	341	0.86
2	15	2.6	3.2e+02	2.7	2.2	2	23	395	416	394	416	0.85
3	15	0.0019	0.24	12.5	4.3	2	23	425	447	424	447	0.93
4	15	2.4e-05	0.0029	18.5	0.6	1	23	453	475	453	475	0.98
5	15	4.6e-06	0.00057	20.8	2.6	1	23	481	503	481	503	0.96
6	15	3.5e-05	0.0044	18.0	2.9	1	23	512	534	512	534	0.97
7	15	6.4e-06	0.00079	20.3	1.4	1	23	540	562	540	562	0.98
8	15	6.5e-06	0.00081	20.3	2.9	1	23	567	589	567	590	0.95
9	15	0.0067	0.84	10.8	4.3	1	23	595	617	595	617	0.99
10	15	0.0096	1.2	10.3	0.4	2	23	637	658	636	658	0.95
11	15	4.6e-05	0.0058	17.6	1.5	1	23	663	686	663	686	0.97
12	15	0.00028	0.035	15.1	1.7	1	23	692	714	692	714	0.96
13	15	0.00022	0.027	15.5	3.6	1	23	720	742	720	742	0.98
14	15	9.3e-06	0.0012	19.8	4.1	1	23	748	770	748	770	0.98
15	15	1.7e-05	0.0022	18.9	0.4	1	21	776	796	776	797	0.94

Sequence Information

Coding Sequence: ATGAGAATTGTTTGCGCCGCGTTAAACTGTAAATATTCGTCAAAAAACGAGGATTCGTCGAATGTcacttttatcaattttcccAATGATGACAcAGCCAAAGTATGGGCAGAATGTTGCGGTAGATCAGATTTAGCCACAAAGTCGAATGAGGAATTGcattcaaattattacatttgttcTCACCACATTGAAGATCGCTGTTACGTGAGCAAAACTGTTCCTGTTGTTCTAGAAGAAGGTACTATTCCTACTTTATTTAGGATCGATAGTGAAAACTCAATAAATATGTTTGATAAAGCACAGCATCTTCAAGAAGTAGGTGTGCCTCTAACATATTGCGATATGAATGTCGAGATAGACGAGTATCACAATATCTCTGTTAGATTTGCCAATTTATGTCGAATCTGTGGCAAATCCACTCTGGATggaatagatattttttcaccCGAGGGTATAGAACTTAAattgaaagagagaataaatttgcatatgcCTATCTCAATTGATATAAACGATACATTGCCACAGAAAGTGTGCACCGATTGCTGtaataaattggaaattacACACTCACTAGTCATTTCATGTCTAAGAACTGATATGCGTTTGAAGCAgattctaaatattgaaagaGAGccAGAATACAAGAATAAGTACAATGCATTGATTGATGAATGCTCATTAGAGATAGTTCAAGAAATGTGTATGGATCATAATATACATCCTAATTCatttactataaataaaatgataaactcTGATTCAGAAAGTTTAAGAGGATTAGGAAATGGAGAATGTTCTGAAAtactgaataataattttcagagcATCGCGAAGAATGTTGCGCCATTAGAATTCGGCACACTAATTCAAACTTGTAGAGAAGTTAACAGTAAAAGTAACACGACTGTCACAGAAATAATTCAACAAGACAAGGTCCAAAATGGACGCTCCAGCGTTTTATGTCAACAATGCCAAACTTTTTTTGAAACACAGGAAATATTTGAGAATcataagatattttgtaataaggacgaaaatgtttctaaacatataaatatgtctaGAACTGTAGAAAATAGAAGATCTGGCAGAAGCAAGATCAATtgcgaaatagaaaattcgCAGACGTGCAAAAGATTGGATGGCAAACAAGTTAGCGATAATGTTGAATCGGTATATTGTACTGTTTGTAATCAAGCATTCAAATGTCAGCAGGATTATGATAATCACAAATATCTTCATGAAAATCTTGTTGAAGTGAATACAAGATGCGGGCATTGTACAAAAGTATATTGTAACAAGAAAGACTTGTTAACTCATATCACGGAATCACATGAgggaagattattatttaagtgcTCTAAATGCGATAAAACATACGAAAAATGGTCTAGTTTAGATATTCACGAAGCTACTCACAGAATGGACAAGCCCTATCTTTGCGATCTATGCGGAAAAAGCTTCAAGCATTCCAATAATTTACGAGGTCATAAAAGAATTCATTTGGAcgaatctttaaagaaaagacACGTGTGTGAGGTCTGTGGTAATGCGTTTAGATCACGATTTCATTTGCGGGAACATATGAATCAACACGATGACAACAAACCTTATTCTTGCGAACAGTGCGGGAAAGCCTTTTACAGGAGGATTCAATTGCGGCAACACAAATTATCGCATGGCTCTAATAAGCACACATGTCCAATTTGCGGTGCAACATTTAATCGTAGAGGCAACATGAATACCCATGTGAAACGGCATCATAACGATGGAGGATATACATGCAgtgtTTGCGCTTACAAATGTAAATCCATGAGCGAATTAAAGCTACATAGAAAAAAGCATACCGAGGAGGAAATAATGGACAGCATTAAGAAGAAATGTACCGACAAGGAGATATGGCATTGTGACATTTGCAATAAGATATTCCCGAAACGCgctattttgttaaatcacGAGCGCATACACGAcgataagttttataaatgtgaCGAATGtgacaaaaaattagcaagtAAAAGTTCGCTGATGTATCACAAGAAGTCGATGCATTTGAGGGAGAGGCCGCACATGTGTCACTATTGCGGAGAGTCGTTCGTTTCGAAAGAGGCACGGCTGATCCATGAGAGGATACATACCGGTGAACGGCCGTATATCTGCAAAGTATGCAACATGCGGTTCAGATGCTCCAGTAATCTCAGCCAGCACATGAAGATTCACACAGGTCTAAAGCCGCACAAGTGCCATTTTTGTAACAAAGGTTTTACGCGCAAGGGCGCGCTAACTGTGCACGAGAGAATCCACACGGGTGTTAAGCCTTATCCTTGTGAGACCTGTGGTAAAAGCTTTTCACAGAAGAATGACATGTTGAAGCATGCCAAACGCGCAACGGCAGATCGATGTAGCGTGGCTAGTGTAACGAGATCTTTAAATCTCGAGAAAAGACTGTATGCCTCTtcaaaaactaaataa
Protein Sequence: MRIVCAALNCKYSSKNEDSSNVTFINFPNDDTAKVWAECCGRSDLATKSNEELHSNYYICSHHIEDRCYVSKTVPVVLEEGTIPTLFRIDSENSINMFDKAQHLQEVGVPLTYCDMNVEIDEYHNISVRFANLCRICGKSTLDGIDIFSPEGIELKLKERINLHMPISIDINDTLPQKVCTDCCNKLEITHSLVISCLRTDMRLKQILNIEREPEYKNKYNALIDECSLEIVQEMCMDHNIHPNSFTINKMINSDSESLRGLGNGECSEILNNNFQSIAKNVAPLEFGTLIQTCREVNSKSNTTVTEIIQQDKVQNGRSSVLCQQCQTFFETQEIFENHKIFCNKDENVSKHINMSRTVENRRSGRSKINCEIENSQTCKRLDGKQVSDNVESVYCTVCNQAFKCQQDYDNHKYLHENLVEVNTRCGHCTKVYCNKKDLLTHITESHEGRLLFKCSKCDKTYEKWSSLDIHEATHRMDKPYLCDLCGKSFKHSNNLRGHKRIHLDESLKKRHVCEVCGNAFRSRFHLREHMNQHDDNKPYSCEQCGKAFYRRIQLRQHKLSHGSNKHTCPICGATFNRRGNMNTHVKRHHNDGGYTCSVCAYKCKSMSELKLHRKKHTEEEIMDSIKKKCTDKEIWHCDICNKIFPKRAILLNHERIHDDKFYKCDECDKKLASKSSLMYHKKSMHLRERPHMCHYCGESFVSKEARLIHERIHTGERPYICKVCNMRFRCSSNLSQHMKIHTGLKPHKCHFCNKGFTRKGALTVHERIHTGVKPYPCETCGKSFSQKNDMLKHAKRATADRCSVASVTRSLNLEKRLYASSKTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01408479;
90% Identity: iTF_01421727;
80% Identity: iTF_01422280;