Tnyl039514.1
Basic Information
- Insect
- Temnothorax nylanderi
- Gene Symbol
- gfi1b
- Assembly
- GCA_030848795.1
- Location
- JASTWM010001542.1:1699013-1702260[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0038 0.59 12.0 3.7 2 23 442 464 441 464 0.95 2 13 0.00045 0.07 14.9 0.2 1 23 470 492 470 492 0.98 3 13 6.5e-06 0.001 20.7 2.6 1 23 498 520 498 520 0.96 4 13 2.8e-05 0.0044 18.7 2.9 1 23 529 551 529 551 0.97 5 13 1.6e-05 0.0025 19.5 1.1 1 23 557 579 557 579 0.97 6 13 2.6e-06 0.00041 21.9 1.3 1 23 584 606 584 606 0.98 7 13 0.006 0.93 11.4 2.7 1 23 613 635 613 635 0.99 8 13 0.0032 0.5 12.2 0.3 2 23 655 676 654 676 0.96 9 13 4e-05 0.0062 18.2 0.7 1 23 682 705 682 705 0.97 10 13 0.015 2.4 10.1 1.7 1 23 711 733 711 733 0.96 11 13 0.00029 0.045 15.5 3.3 1 23 739 761 739 761 0.99 12 13 2.4e-05 0.0038 18.9 3.6 1 23 767 789 767 789 0.98 13 13 2.5e-05 0.0039 18.8 0.4 1 21 795 815 795 816 0.94
Sequence Information
- Coding Sequence
- ATGAGACTCGTTTGCGCCGcgttaaattgtaaatattcgTCAGAAAGCGAGGATTCGTCGAATGTCACTTTTATCAATTTTCCCAACGATGACACAGCCAAAGTATGGGCGGAATGTTGCGGCAGATCGGATTTAGTCACAAAATCGAATGCGGAATTGCATTtgaattattacatttgttcTCACCACGTTGAAGATCGCTGTTACGTGAGCAAAACTGTTCCCATTGTTTTAAAAGAAGGTACTATTCCTACTTTATTTGGGACCGACTTGACTACCGATGGtgaaaacttaataaatatgtttgataAAGCACAGCCTCTCCAACAAGTAGGTGATGATGTGCCTCTAACGTATTGCGATATGAATGAAATTGAGATAGACGAGTATCATAATATCTCTGTTAGATTTGCCAATTTATGTCGAATCTGTGGCAAATCCATTCTGGATGGAATAAACATCTTTACAGCCGAGGGCATAGAGCTTAAATTAAAAGAGAGAATAAATTTGCATATGCCTATCACGATTGACATAGACGATTCATTGCCACAGAAAGTATGTACCGATTGCTGTAATAAATTGGAAATTGCACACTCACTAGTCGTTTCATGTCTAAGAACTGATATGCGTTTGAAACAGATTCTAAATATTGAGAGAGAGCCGGAATACGAGAATAAGTACAATGCGTTGATTAACGAATGTTCATTAGAGATAGTTGAAGAAATGTATATGGATCTTGATACGCATCCTAATTCATTTactataaataagataataaactCTGATTCAGAAACAAGTTTGAGAGGATTAGGAAATGGAGAATGTTCTGAAatacagaataataattttcagagCATTGCGAGGAATGTTGTACCATTAGAACTCAGTACTTTAATCCAAACTAGTAGTAGAGGAGTTAATAGTGAAAGTAACGTAACTATCACGGAAgagatttcaaaaattcaacaaGATAAGATCCAGAATGGAAGCCCTAGCGTTTTATGTCGGCAATGCCAAACTTTTTGTGAAACacagaaaatatttgagaatcataaaatattttgtggtAAGGAACAAAATGTCTCTAAACGTGCAGATATGTCTAGAACTGCAGAAAATAAAAGGTCTGGCAGAGACAAGCAGATTAATCGCAAAGTAGAAAATTTCCAGACGTGCAACAAAAGATTCGATGGCAAACAAATTATCAATAATGTTGAAAGCTGTGAATCATTACATTGTACTGTTTGCAACCAAACATTCAAATGTCAGCTGGATTATGATAATCATAAATATCTTCATGGAAATCTTATTGAAGTTAATAAAAGATGCGGTCattgtaaaaaagaatattgtaaCAGAAAAGACTTGGTAATTCATATCATGGAATCGCACGAAGGACGATTATCATTTCAGTGCTCTGCATGCGATAAAACATACGAGAAATGGTCTAGTTTAGATATTCACGAAGCTACTCACAGAATAGATAAACCCTATCTTTGCGATCTGTGCGGAAAAAGCTTTAAGCATTCCAATAATTTAAGAGGGCATAAAAGAATTCATTTGGACGAATCTATAAAGAAAAGACACGTGTGTGAGATCTGTGGCAATGCATTTAGATCACGATTTCATTTGCGGGAACATATGAATCAACACAATGGCAACAGACCTTATTCTTGTGAACAGTGCGGAAAAGCATTTTATAGGAGGATTCAATTGCGACAACACAAATTATTGCATAGCTCTAATAGGCACACATGTCCGATTTGCGGTGCAACATTTAATCGTAAAGGAAATATGAACACACACGTGAAACGGCATAATAACGATAATGGAGGATACACATGCAGCGTTTGCGCCTACAGATGTATATCCATGAGTGAATTGAAGATACATAGGAAAAAGCATACCGAGGAGGAAATAGTGGACAGTATTAAGAAGAAATGTACCGACAAGGAGATATGGCGTTGTAACATTTGTAGTAAGATATTCTCGAAACGCGCTATTTTGTTAAATCACGAGCGCGTACATGGAAACGATAAGTTTTATGAATGTGACGAATGTGGCAAGAAATTAGCAAGTAAAAGTTCGCTGATGTATCACAAGAAGTCGATGCATTTAAGAGAGAGGCCACACATGTGTCACTATTGCGGAGATTCGTTTGTTTCGAAAGAGGCACGGCTAATCCACGAAAGGATACATACCGGTGAACGTCCATACGTCTGCAAGGTATGCAACATGCGGTATAGATGTTCCAGTAATCTCAGCCAGCACATGAGGATCCACACGGGTCTGAAGCCACACAAGTGTCATTTTTGCAACAAAGATTTTACGCGCAAAGGCGCGCTAATCGTGCACGAGAGAATCCACACGGGTGTTAAGCCTTATCCTTGTGAGACCTGTGGTAAAAGTTTCTCACAGAAGAATGACATGTTAAAGCACGCTAAACGCGCAACGGCAGATCGATGCAGTGCCAGTGCAGCCGGTGTAACGAGATCTTTAAACggggaaaaaaatatgttaaagcaTACTGTGGTGCACGAGCAAGATACCTTAGTAATTTCGAATATCAATTCATCGCATATTCTTCAAGTTTATGTCAATACTAGCGCTTCTtcggaaattaaataa
- Protein Sequence
- MRLVCAALNCKYSSESEDSSNVTFINFPNDDTAKVWAECCGRSDLVTKSNAELHLNYYICSHHVEDRCYVSKTVPIVLKEGTIPTLFGTDLTTDGENLINMFDKAQPLQQVGDDVPLTYCDMNEIEIDEYHNISVRFANLCRICGKSILDGINIFTAEGIELKLKERINLHMPITIDIDDSLPQKVCTDCCNKLEIAHSLVVSCLRTDMRLKQILNIEREPEYENKYNALINECSLEIVEEMYMDLDTHPNSFTINKIINSDSETSLRGLGNGECSEIQNNNFQSIARNVVPLELSTLIQTSSRGVNSESNVTITEEISKIQQDKIQNGSPSVLCRQCQTFCETQKIFENHKIFCGKEQNVSKRADMSRTAENKRSGRDKQINRKVENFQTCNKRFDGKQIINNVESCESLHCTVCNQTFKCQLDYDNHKYLHGNLIEVNKRCGHCKKEYCNRKDLVIHIMESHEGRLSFQCSACDKTYEKWSSLDIHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDESIKKRHVCEICGNAFRSRFHLREHMNQHNGNRPYSCEQCGKAFYRRIQLRQHKLLHSSNRHTCPICGATFNRKGNMNTHVKRHNNDNGGYTCSVCAYRCISMSELKIHRKKHTEEEIVDSIKKKCTDKEIWRCNICSKIFSKRAILLNHERVHGNDKFYECDECGKKLASKSSLMYHKKSMHLRERPHMCHYCGDSFVSKEARLIHERIHTGERPYVCKVCNMRYRCSSNLSQHMRIHTGLKPHKCHFCNKDFTRKGALIVHERIHTGVKPYPCETCGKSFSQKNDMLKHAKRATADRCSASAAGVTRSLNGEKNMLKHTVVHEQDTLVISNINSSHILQVYVNTSASSEIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01408479;
- 90% Identity
- iTF_01408479;
- 80% Identity
- -