Waur002931.1
Basic Information
- Insect
- Wasmannia auropunctata
- Gene Symbol
- -
- Assembly
- GCA_000956235.1
- Location
- NW:1996168-2000313[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.7 6.4e+02 0.6 0.1 7 21 349 363 334 364 0.88 2 15 5.1 3.7e+02 1.3 3.4 3 23 409 429 407 429 0.80 3 15 0.0087 0.64 10.0 2.2 2 23 439 461 438 461 0.95 4 15 7.4e-05 0.0054 16.6 0.6 1 23 467 489 467 489 0.98 5 15 4.2e-06 0.00031 20.5 3.1 1 23 495 517 495 517 0.96 6 15 2.3e-05 0.0017 18.1 3.2 1 23 526 548 526 548 0.97 7 15 7.3e-06 0.00054 19.7 2.2 1 23 554 576 554 576 0.98 8 15 2e-07 1.4e-05 24.7 0.5 1 23 581 603 581 603 0.98 9 15 0.0013 0.094 12.7 5.1 1 23 610 632 610 632 0.99 10 15 0.00024 0.018 15.0 0.3 2 23 652 673 651 673 0.97 11 15 2.2e-05 0.0016 18.2 0.7 1 23 679 702 679 702 0.97 12 15 0.013 0.95 9.5 1.6 1 23 708 730 708 730 0.96 13 15 0.00038 0.028 14.3 3.4 1 23 736 758 736 758 0.98 14 15 7.3e-06 0.00054 19.7 4.1 1 23 764 786 764 786 0.98 15 15 1.4e-05 0.00099 18.9 0.4 1 21 792 812 792 813 0.94
Sequence Information
- Coding Sequence
- ATGAGGACCGTCTGTGCCGcgttaaattgcaaatattccTCGGAAAGCAAGGACTCGTCGAATGTcacttttatcaattttccCAACGATGACacAGCCAAAGTATGGGCGGAATGTTGCGGCAGATTGGATTTAATCACAAAGTCGAATGCGGAACTGCATttgaattattacatttgttcCCACCACATTGAAGATCACTGTTACGCCAGCAAAACCGTTCCCGTTGTTGTGGAGGAAGGTGCCACCCCTACTTTGTTTGGGACTGGCTTGGCTACCGACGGTAAAGattcgataaatatatttgataaggCGCAGCATCTCCAGGAAGTAGGTGACAGTGTGCCTCTAACGTATAACGATATGAACGTCGAGGTGGACGAGTATCGCAACATCTCTGTCAAATTTGTCAATTTATGTCGAATCTGTGGCAAATCCGCTCTGGATGGAATAGATATATTTGCAACCAAAGGCGTAGAGCTTAAATTAAAGGAAAGAATAAATCTGCATATGCCTATCTCGATTGACATAAACGATTCGTTGCCACAGAAAGTATGTACTGATTGCTGTAACAAATTAGAAATTGCGCATTCACTAGTCATTTCATGTCTGAGAACAGATATGCGTTTGaaacaatttctaaatatCGAGAGAGAGCCGGAATATGAGAACAAGTACAATGCACTGATTGACGAATGTTCATTGGAGTTAGTTCAAGAAATGTGTATGGACGACAATGTGCATCCCaatttatttacgataaaTAAGACGATAAACTCTGAATCAAGTTTGAGAGGATTGGGAAATGGAGAGTGTttcgaaatacaaaataataattttcagagcATTGCCAAAAGTGTTGTGCCACTAGAGCTCAATACTCTAATTCAAACTTGTGGAGAAGTTACCAGTAAATGTAACACAAGTAAGACTACCACGGAAGAGACATCGAACGTGCAGCAAGATAAGATTCAGAATGGAAGTCTCAGCGTTTTATGCCTACAGTGTCAAACTCTCTGTGAAACACAGGAGATATTTGAgagtcataaaatattttgcagtaAGCAAAATGCGTCTAAACATATAGATACGTGTAGGACTGCTAAAAACGGAAAGTACGGAAACAAGCAAATTAATCGGGAAGTAGAAAGTTCCCAGGCATGCAACGAAACATTTGATGGCAAGCAAGTTATTGATAATGTTAAAAGCCGCGAGTCGATGCATTGTACCATTTGCAACCGAGCATTCGAATGTCAGCAGGATTACGACAATCACAAATACCTTCATGAAAATCTTACGAGCGAAGCGAATAAAAGATGCGGCCATTGTGAACAAGTATATCACAACAGAAAAGACTTGTTAATTCATATCATGGAATCGCACGAGGGACGATTGTCGTTTAAGTGCTCTACATGCGACAAAACGTACGAGAAGTGGTATAGTCTAGACATTCACGAAGCTACTCACAGAATAGATAAGCCCTATCTTTGCGATACGTGCGGGAAAAGCTTTAAGCATTCCAATAATTTGAGGGGTCACAAAAGAATTCATTTGGACGAGGCTGTAAAGAAAAGGCACGTGTGCCAGATCTGTGGCAATGCGTTTAGATCACGATTTCATTTGCAAGAACATATGAATCAACATGATGATAACAGACCTTATTCTTGTGAACAATGCGGGAAATCTTTCTACAAGAGGGTTCAATTGCGACAACACAAATTATCGCATGGCTCTAATAGTCACGTATGTCCGATTTGCGGGGCAACGTTTAATCGTAGAGGGAACATGAACGCGCACATGAAACGGCATAATAACGATAATGGAGGATATACATGCAGCGTTTGTACTTACAAATGTAAATCTATGAGCGAGTTGAAGATACACAGGAAAAAGCATTCCGAGGAGGAAATAGTAGACagcattaaaaagaaatgcgCCGATAAGGAGGTGTGGCGTTGTAATATTTGCAACAAGATATTCGCGAAGCGCGCTTTCTTGTTATATCACGAGCGCGTACACGGAGACGATAAGTTTTACGAGTGCGATGAATGCGGCAAGAAATTAGCGAGCAAGAGCTCGCTGATGTATCACAAGAAGTCGATGCATTTGAGGGAGAAGCCGCACATGTGTCACTACTGCGGCGATTCGTTCGTCTCGAGAGAGGCACGGCTGATTCACGAGAGGATACACACCGGCGAACGCCCGTACGTCTGCAAGGTGTGCAATATGCGGTACAGATGCTCCAGTAATCTCAGCCAGCACATGAAGATCCACACGGGTCTGAAGCCGCACAAGTGCCATTTCTGCAACAAAGGTTTTACGCGCAAAGGCGCGCTAACCGTGCACGAGAGAATCCACACGGGTGTTAAGCCTTATCCTTGCGAGACCTGCGGTAAAAGCTTCTCGCAGAAGAACGACATGTTGAAGCACGCCAAACGCACAACGGCGGACCGATGCGGCGCGGTTGGTGCGAAATCTGTAAATGGAAAAAGGAATACTGTCGTGCACGAACAAGATTCCTTAGTAATATCGAATGTCAACGCGTCACATTCTTCAAATTTATGCCAATAG
- Protein Sequence
- MRTVCAALNCKYSSESKDSSNVTFINFPNDDTAKVWAECCGRLDLITKSNAELHLNYYICSHHIEDHCYASKTVPVVVEEGATPTLFGTGLATDGKDSINIFDKAQHLQEVGDSVPLTYNDMNVEVDEYRNISVKFVNLCRICGKSALDGIDIFATKGVELKLKERINLHMPISIDINDSLPQKVCTDCCNKLEIAHSLVISCLRTDMRLKQFLNIEREPEYENKYNALIDECSLELVQEMCMDDNVHPNLFTINKTINSESSLRGLGNGECFEIQNNNFQSIAKSVVPLELNTLIQTCGEVTSKCNTSKTTTEETSNVQQDKIQNGSLSVLCLQCQTLCETQEIFESHKIFCSKQNASKHIDTCRTAKNGKYGNKQINREVESSQACNETFDGKQVIDNVKSRESMHCTICNRAFECQQDYDNHKYLHENLTSEANKRCGHCEQVYHNRKDLLIHIMESHEGRLSFKCSTCDKTYEKWYSLDIHEATHRIDKPYLCDTCGKSFKHSNNLRGHKRIHLDEAVKKRHVCQICGNAFRSRFHLQEHMNQHDDNRPYSCEQCGKSFYKRVQLRQHKLSHGSNSHVCPICGATFNRRGNMNAHMKRHNNDNGGYTCSVCTYKCKSMSELKIHRKKHSEEEIVDSIKKKCADKEVWRCNICNKIFAKRAFLLYHERVHGDDKFYECDECGKKLASKSSLMYHKKSMHLREKPHMCHYCGDSFVSREARLIHERIHTGERPYVCKVCNMRYRCSSNLSQHMKIHTGLKPHKCHFCNKGFTRKGALTVHERIHTGVKPYPCETCGKSFSQKNDMLKHAKRTTADRCGAVGAKSVNGKRNTVVHEQDSLVISNVNASHSSNLCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01408479;
- 90% Identity
- iTF_01523433;
- 80% Identity
- iTF_01523433;