Sred007873.2
Basic Information
- Insect
- Scaptomyza reducta
- Gene Symbol
- bab2
- Assembly
- GCA_035044485.1
- Location
- JAWNNV010000755.1:229024-230957[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-18 1e-14 53.9 0.0 1 43 59 102 59 104 0.95 2 2 0.042 72 3.2 0.1 29 42 376 390 376 392 0.91
Sequence Information
- Coding Sequence
- ATGATTGAGACGAGCGGACATGGCTGGATGGGTGCACCGGCAACAGGCGCATCTGTGGCGGCAGACAGCTACCAGTATCAGTTGCAGTCGATGTGGCAAAAGTGCTGGAACACCAACCAACAGAATCTGGTGCAACAGCTGCGCTTTCGCGAACGAGGACCACTCAAGTCCTGGCGACCCGAAGCCATGGCCGAGGCCATCTTTAGTGTATTGAAGGAGGGACTTTCGCTATCGCAGGCAGCCCGCAAATATGATATACCCTATCCCACATTTGTGCTCTATGCGAACCGTGTTCACAATATGCTCGGCCCTTCCCTCGATGGCGGCACTGATCCCCGGCCCAAGGCACGTGGACGTCCCCAACGCATTCTGTTGGGCATGTGGCCCGAGGAGCTCATACGCAGCGTCATTAAGGCCGTCGTCTTCCGCGACTATCGTGAGATCAAGGAGGACATTGGCGCCCATCAGTACGCAAATGGACAGGCACATGGCTCTCACTATGGCTCTGGCAACTCGTCGGCAGCTAATGGCTATCACAGTGCCGCGGTGAAGATGGCCGCACAGAATGCGGCTTTAGCTCCACCCGATGGCAGCAATCCGCTTAGCACCATGACAGAGACACTCCGTCGCCAGATACTctcccagcagcaacagcaacagcaacagcagcaacaacaatcgccgCATGTCCAATCGATGAACATGTACAAGTCGCCGGCATACTTGCAACGCTCCGAGATCGAGGATCAGGTGTCTGCAGCCGCGGCAGCCAAGCACCAACAGAACGAGCGACGAGGCAGCGAGAATCTGCCCGATCTAAGTGCACTTGGATTGATGGGACTACCCGGTCTGAATGTGATGCCATCGCAGCAGGCGCCGCATCAGCGTGGCGGTGGTGGAGGGGGTGCAGCAGGAGGCAGTGCAGGCGCTGCCATGCATCCCAGTGCCGCCAGCTATGCGAGAGAATTATCCCGCGAGCGAGAACGCGAGCGCGAGATGTCCCGAGATCGGGAACTGAAGGAGGCGATGCATGCCCGTCAATATGGCAATCAGTCGCGTGGTTCGAACTCCTCGGCAGGCAGCAAATCGGCAGCCGGGTCATCGAATCGTCCCGGTGCCGCATCCCCGTACTCGTCACTGTATTCGAAACATGCCAAGGAGCATCCAAACTATGCGTACAACAAACGCTTCCTGGAGAGTCTGCCCGCCGGCATTGATTTTGAGGCGATTGCCAATGGCTTGCTGCAGAAGTCCGTGAACAAGAGTCCGCGCTTCGAGGACTTCTTTCCGGGCCAGGACATGAGCGAACTTTTCGCCAGCGCCACTGACGCAGCAGGAGTCGGTGTCGGCGTCGGTGCCGGAGCAGGTgcatcggcagcagcagcggcggcggcagcagcagcagcctatGCGCCGGTCTCACTGCGAGAATCGCCACTGATGAAGATCaagctggagcagcagcaggcgacAGAGTTGCCGCACGAGGATTGA
- Protein Sequence
- MIETSGHGWMGAPATGASVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDIGAHQYANGQAHGSHYGSGNSSAANGYHSAAVKMAAQNAALAPPDGSNPLSTMTETLRRQILSQQQQQQQQQQQQSPHVQSMNMYKSPAYLQRSEIEDQVSAAAAAKHQQNERRGSENLPDLSALGLMGLPGLNVMPSQQAPHQRGGGGGGAAGGSAGAAMHPSAASYARELSREREREREMSRDRELKEAMHARQYGNQSRGSNSSAGSKSAAGSSNRPGAASPYSSLYSKHAKEHPNYAYNKRFLESLPAGIDFEAIANGLLQKSVNKSPRFEDFFPGQDMSELFASATDAAGVGVGVGAGAGASAAAAAAAAAAAYAPVSLRESPLMKIKLEQQQATELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00523617; iTF_00577705; iTF_00590894; iTF_00483612; iTF_00582185; iTF_00618321; iTF_00503191; iTF_00571061; iTF_00537433; iTF_01356057; iTF_00510461; iTF_00555005; iTF_00604012; iTF_00560961; iTF_01324033; iTF_00805892; iTF_01320391; iTF_01322567; iTF_01318954; iTF_00519084; iTF_00901424; iTF_00802766; iTF_00532297; iTF_00509740; iTF_00516180; iTF_00805108; iTF_00803525; iTF_01326318; iTF_01556048; iTF_00547282; iTF_01325588; iTF_00541685; iTF_00567460; iTF_00495783; iTF_00804310; iTF_01324823; iTF_01321114; iTF_01327811; iTF_00598075; iTF_00530878; iTF_00550820; iTF_00475142; iTF_00526502; iTF_00534503; iTF_00490705; iTF_00506033;
- 90% Identity
- iTF_00573970;
- 80% Identity
- -