Hhis011909.2
Basic Information
- Insect
- Hirtodrosophila histrioides
- Gene Symbol
- bab2
- Assembly
- GCA_037075165.1
- Location
- JBAMCL010000515.1:2904564-2906964[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-17 3.9e-14 52.3 0.0 1 43 109 152 109 154 0.95
Sequence Information
- Coding Sequence
- ATGCTTTGGGCCTCATTTATGGCATTAATAAACTTTTATGGCCAACATTTGCAAGTCGCGGTAGCCGCGGCCGCCTTTGTGCAAATGTCGCCAGTCAAAAAAATCCAACTAAACGGCCTTTTCCTTATCGTCTTCCACTTGCAGGCCAAAATGATTGAGACCGGCGGACACGGCTGGATGGGTGCTCCGGCAACAGGCACATCTGTGGCGGCAGACAGCTACCAGTACCAGCTGCAGTCCATGTGGCAGAAGTGCTGGAATACTAACCAACAGAATCTagtgcagcagctgcgcttTCGCGAGCGGGGCCCACTCAAGTCCTGGCGCCCGGAAGCCATGGCCGAGGCCATATTCAGTGTGCTCAAGGAGGGACTATCGCTGTCGCAGGCCGCCCGCAAGTTCGACATACCCTATCCTACGTTCGTGCTCTACGCAAATCGGGTGCACAACATGCTGGGACCCTCCCTGGACGGAGGCACCGATCCACGGCCCAAGGCGCGTGGCCGTCCGCAGCGCATCCTGCTCGGCATGTGGCCGGAGGAGCTCATCCGCAGTGTCATCAAGGCTGTCGTGTTCCGGGACTACCGTGAGATCAAGGAGGACATGGGGGCGCATCAGTACGCCAATGGACAAGCGCACGGCGCGCACTTCGGCTCCGGAAACTCTGCAGCGGCTGCCAACGGTTACCACAACGCGGCCGTCAAAATGGCCGCCCAGAACGCCGCCCTGGCGCCGCCCGACAGCAGCAACCCGCTCAGCACCATGACGGAGACGCTGCGCCGCCAGATACTCtcccaacagcaacagcagcagcagcagtcgccgcATGTGCAGTCCATGAACATGTACAAGTCGCCGGCTTACCTGCAGCGCTCGGAGATCGAGGACCAAGTCTCCGCTGCAGCGGCGGTGGCCGCAGCCAAGCACCAGCAGAGCGAGCGCCGCGGGTCCGAGAACCTGCCTGACCTGAGCGCGCTGGGACTGATGGGCCTGCCTGGTCTGAACGTAATGCCCACGCAGCAGGCGCCGCACCAGCGCGGCtcgggcggcggcggcgccgGCGCGGGCACAGGGATGCATCCCAGTGCGGCCAGCTATGCGCGGGAGCTGTCACGGGAGAGGGAGCGGGAACGGGAGATCTCGCGGGACCGTGAGCTGAAGGAGGCGATGCATGCGCGTCAGTACGGCAATCAGTCGCGGGGATCGGGCTCGAACTCTTCTGCGGGCAGCAAGTCGGCAGCGTCGCACGGCGCCTCTTCCAGTCGCCCGGGCGCCGCGTCGCCCTACTCCTCGCACTACGCCAAGCACGCCAAGGAGCACCCGAGCTACGCCTACAACAAGCGCTTCCTGGAGAGCCTGCCCGCGGGCATAGACTTCGAGGCGATCGCCAACGGGCTGCTGCAGAAGTCGGTGAACAAGAGTCCACGCTTCGAGGACTTCTTCCCGGGCCAGGACATGAGTGAGCTCTTCGCCAGCTCCGACGCAGGCGCCggggcggcggctgctgcggccgcAGCTGCGGCTGCCTACGCCCCCTCCGGCGTGCGGGAGTCGCCTCTGATGAAGATcaagctggagcagcagcaggccgCCGAGCTGCCGCACGAGGATTGA
- Protein Sequence
- MLWASFMALINFYGQHLQVAVAAAAFVQMSPVKKIQLNGLFLIVFHLQAKMIETGGHGWMGAPATGTSVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMGAHQYANGQAHGAHFGSGNSAAAANGYHNAAVKMAAQNAALAPPDSSNPLSTMTETLRRQILSQQQQQQQQSPHVQSMNMYKSPAYLQRSEIEDQVSAAAAVAAAKHQQSERRGSENLPDLSALGLMGLPGLNVMPTQQAPHQRGSGGGGAGAGTGMHPSAASYARELSREREREREISRDRELKEAMHARQYGNQSRGSGSNSSAGSKSAASHGASSSRPGAASPYSSHYAKHAKEHPSYAYNKRFLESLPAGIDFEAIANGLLQKSVNKSPRFEDFFPGQDMSELFASSDAGAGAAAAAAAAAAAYAPSGVRESPLMKIKLEQQQAAELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01327085;
- 90% Identity
- iTF_00803525; iTF_00538154; iTF_00802766; iTF_00589475; iTF_00595171; iTF_00805892; iTF_00537433; iTF_00510461; iTF_00470792; iTF_00568900; iTF_00579210; iTF_00509025; iTF_00520554; iTF_00614112; iTF_00585890; iTF_00608365; iTF_00557833; iTF_00610574; iTF_00583602; iTF_00528725; iTF_00585113; iTF_00601700; iTF_00533726; iTF_00506784; iTF_00575504; iTF_00901424; iTF_00832079; iTF_01556048; iTF_00478645; iTF_01356057; iTF_00562394; iTF_01549501; iTF_00584352;
- 80% Identity
- -