Smon004806.1
Basic Information
- Insect
- Scaptomyza montana
- Gene Symbol
- bab2
- Assembly
- GCA_018904305.1
- Location
- JAEIGR010000006.1:1730477-1732434[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-18 1.1e-14 53.9 0.0 1 43 59 102 59 104 0.95 2 2 0.21 5.7e+02 0.4 0.0 29 42 382 396 382 398 0.91
Sequence Information
- Coding Sequence
- ATGATTGAGACAAGCGGACATGGCTGGATGGGTGCACCGGCAACAGGCGCATCTGTGGCGGCAGACAGCTACCAGTATCAGTTGCAGTCCATGTGGCAAAAATGCTGGAACACTAACCAACAGAATTTGGTGCAACAGCTGCGCTTTCGCGAACGAGGACCACTCAAATCGTGGCGGCCCGAAGCCATGGCCGAGGCCATATTCAGCGTACTAAAAGAAGGACTCTCGCTGTCGCAAGCTGCACGCAAATACGATATACCCTATCCCACATTTGTACTCTATGCGAATCGTGTTCACAATATGCTCGGACCTTCGCTCGACGGTGGCACCGATCCCAGGCCCAAGGCACGTGGACGTCCCCAGCGCATTCTGCTCGGCATGTGGCCCGAAGAGCTCATACGCAGCGTCATCAAGGCCGTCGTGTTCCGTGACTATCGTGAGATCAAGGAGGATATGGGCGCACATCAGTACGCAAATGGACAGGCTCATGGCTCACACTTTGGTTCGGGCAACTCGTCGGCAGCTGCCAATGGCTATCATAGTGCAGCGGTTAAGATGGCCGCACAAAATGCTGCTCTTGCTCCACCCGATGGCAGCAATCCGCTTAGCACCATGACGGAGACACTCCGACGCCAGATACTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTGCAACGCTCCGAGATTGAGGATCAGGTGTCCGCAGCGGCGGCAGCCAAGCATCAGCAGAACGAGCGACGAGGCAGTGAGAATCTGCCAGATCTAAGTGCGCTTGGATTGATGGGCTTGCCGGGTCTGAATGTGATGCCATCGCAGCAGGCGACACATCAGCGTGGAGGCGGCGGTGGAGCGGCAGGTAATGGTGGCAGTGCTGGCGCTGCCATGCATCCCAGTGCCGCCAGCTATGCGAGAGAACTATCCCGTGAGCGTGAACGAGAGCGTGAAATGTCACGGGATCGGGAGCTTAAGGAGGCGATGCACGCGCGTCAATATGGCAATCAGTCGCGTGGTTCCAGCTCCTCAGCGGGCAGCAAATCGGCAGCCGGCTCATCGAGTCGTCCCGGTGCCGCATCGCCCTACTCCGCACTCTATTCGAAACATGCCAAGGAACATCCGAACTATGCGTATAACAAACGCTTTCTGGAGAGTCTGCCCGCCGGCATTGATTTCGAGGCACTTGCCAATGGATTGCTGCACAAGTCGGTGAATAAGAGTCCGCGTTTTGAGGACTTCTTTCCGGGCCAGGATATGAGCGAGCTGTTTGCCAGCGCCACGGCAGCAGCAGCGGCGGCAGCAGCAGCTGCCTATGCGCCCGGCACAATGCGAGAATCCCCACTAATGAAGATCAAGCTGGAGCAACAGCAGGCGACAGAGTTGCCGCACGAGGATTGA
- Protein Sequence
- MIETSGHGWMGAPATGASVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMGAHQYANGQAHGSHFGSGNSSAAANGYHSAAVKMAAQNAALAPPDGSNPLSTMTETLRRQILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLQRSEIEDQVSAAAAAKHQQNERRGSENLPDLSALGLMGLPGLNVMPSQQATHQRGGGGGAAGNGGSAGAAMHPSAASYARELSREREREREMSRDRELKEAMHARQYGNQSRGSSSSAGSKSAAGSSSRPGAASPYSALYSKHAKEHPNYAYNKRFLESLPAGIDFEALANGLLHKSVNKSPRFEDFFPGQDMSELFASATAAAAAAAAAAYAPGTMRESPLMKIKLEQQQATELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01327085;
- 90% Identity
- iTF_01322567;
- 80% Identity
- -