Spar003376.1
Basic Information
- Insect
- Scaptomyza parva
- Gene Symbol
- bab2
- Assembly
- GCA_035044645.1
- Location
- JAWNNT010000065.1:14167477-14169318[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6e-18 1e-14 53.9 0.0 1 43 59 102 59 104 0.95 2 2 0.33 5.2e+02 0.4 0.0 29 42 376 390 376 392 0.91
Sequence Information
- Coding Sequence
- ATGATTGAGACGAGCGGACATGGCTGGATGGGTGCACCGGCAACAGGCGCATCTGTGGCGGCAGACAGCTACCAGTATCAGTTGCAGTCGATGTGGCAAAAGTGCTGGAACACTAACCAACAGAATCTGGTGCAACAGTTGCGTTTTCGTGAACGAGGACCACTCAAATCCTGGCGACCCGAAGCCATGGCCGAAGCCATCTTTAGTGTATTGAAGGAGGGACTTTCCTTATCACAGGCAGCTCGCAAATACGATATACCCTATCCCACATTTGTGCTCTATGCGAATCGTGTTCACAATATGCTTGGACCTTCCCTGGATGGCGGCACTGATCCCCGACCCAAGGCACGTGGACGTCCTCAACGCATTCTGTTGGGCATGTGGCCCGAGGAACTTATCCGTAGCGTCATCAAGGCCGTTGTCTTCCGGGACTATCGTGAGATCAAGGAGGATATAAGCGCCCATCAGTACGCCAATGGACAGGCACATGGCGGTCACTATGGTTCTGGTAACTCGCCAGCTTCGAATGGTTATCATAGTGCTGCGGTTAAGATGGCCGCTCAGAATGCTGCTTTGGCTCCACCCGATGGCAGTAATCCGCTGAGCACCATGACCGAGACCCTACGTCGTCAGATACTctcccagcagcaacaacaacaacaacagcagcaacaacaatcgccgCATATGCAGTCGATGAATATGTACAAGTCACCGGCATACTTGCAACGTTCCGAGATTGAGGATCAGGTCTCGGCGGTGGCAGCAGCCAAGCATCAGCAGAGCGAGCGACGAGGCAGTGAGAATCTGCCCGATCTAAGTGCACTTGGTTTGATGGGATTGCCTGGTCTGAATGTGATGCCATCACAGCAAGCCTCGCATCAGCGTAGTGGTGGGGGACAAGCAGGTAATGGAGGCAGTGCAGGCGCTGCCATGCATCCCAGTGCCGCCAGCTATGCGAGAGAACTTTCCCGAGAGCGTgaacgagagcgagagatgTCCCGAGATCGGGAACTCAAGGAGGCCATGCATGCCCGTCAGTATGGCAATCAGTCGCGTGGTTCGAACTCCTCGGCAGGCAGTAAATCGGCTGCCGGGTCATCAAGTCGCCCCGGTGCCGCTTCACCCTACTCCGCTCTGTACTCGAAACATGCCAAGGAGCATCCGAATTATGCGTATAACAAACGTTTCCTGGAGAGTCTTCCCGCCGGCATTGATTTCGAGGCGATTGCCAATGGACTGCTGCACAAGTCGGTGAACAAGAGTCCGCGCTTCGAGGACTTCTTTCCGGGTCAGGACATGAGTGAACTCTTCGCCAGCGCGAGTGATGCCGCCGGGGTTGCAGCTGGGGCAGGTGCctcggcagcggcagcagcggcggcagcagcagcagcttatgCACCGGCCGCCTTACGCGAATCCCCTCTGATGAAGATCAAGTTGGAGCATCAGCAGGCGACAGAGTTGCCCCACGAGGATTGA
- Protein Sequence
- MIETSGHGWMGAPATGASVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDISAHQYANGQAHGGHYGSGNSPASNGYHSAAVKMAAQNAALAPPDGSNPLSTMTETLRRQILSQQQQQQQQQQQQSPHMQSMNMYKSPAYLQRSEIEDQVSAVAAAKHQQSERRGSENLPDLSALGLMGLPGLNVMPSQQASHQRSGGGQAGNGGSAGAAMHPSAASYARELSREREREREMSRDRELKEAMHARQYGNQSRGSNSSAGSKSAAGSSSRPGAASPYSALYSKHAKEHPNYAYNKRFLESLPAGIDFEAIANGLLHKSVNKSPRFEDFFPGQDMSELFASASDAAGVAAGAGASAAAAAAAAAAAYAPAALRESPLMKIKLEHQQATELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01327085;
- 90% Identity
- iTF_00573970;
- 80% Identity
- -