Sgra005583.1
Basic Information
- Insect
- Scaptomyza graminum
- Gene Symbol
- bab2
- Assembly
- GCA_018901835.1
- Location
- JAEIFL010000243.1:791686-793596[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-17 2.5e-14 52.5 0.0 1 43 59 102 59 104 0.95 2 2 0.24 4.6e+02 0.4 0.0 29 42 382 396 382 398 0.91
Sequence Information
- Coding Sequence
- ATGATTGAGACAAGCGGACATGGCTGGATGGGTGCACCGGCAACAGGCGCATCTGTGGCGGCAGACAGCTACCAGTATCAGTTGCAGTCCATGTGGCAAAAATGCTGGAACACCAATCAACAGAATTTGGTGCAACAGCTGCGCTTCCGCGAACGCGGACCCCTCAAATCGTGGCGACCCGAAGCCATGGCCGAGGCCATATTCAGCGTTCTAAAGGAGGGACTCTCCCTGTCCCAAGCTGCACGCAAATTCGATATACCCTATCCCACGTTTGTGCTCTATGCGAATCGCGTGCACAACATGCTCGGCCCGTCGCTCGACGGCGGCACCGATCCCCGGCCCAAGGCACGTGGACGTCCCCAACGCATTCTGCTGGGCATGTGGCCCGAAGAGCTCATCCGCAGCGTCATCAAGGCCGTCGTCTTCCGTGACTATCGTGAGATCAAGGAGGACATGGGCGCACACCAGTACGCAAATGGACAGGCACACGGCTCCCACTTTGGTTCGGGCAACTCGTCGGCTGCTGCCAATGGCTATCATAGTGCAGCGGTTAAGATGGCCGCACAAAATGCTGCTCTTGCTCCACCCGATGCCAGCAATCCGCTTAGCACCATGACCGAGACACTCCGTCGCCAGATACTCTCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACGCCGCACGTGCAATCGATGAATATGTACAAGTCGCCGGCCTACTTGCAACGCTCCGAGATCGAGGATCAGGTGTCGGCAGCTGCGGCAGCCAAGCATCAGCAGAACGAGCGACGCGGCAGTGAGAATCTGCCGGATCTGAGTGCGCTTGGATTGATGGGATTGCCGGGTCTGAATGTGATGCCATCGCAGCAGGCGCCACATCAGCGTGGCGGCGGCGGTGGAGGTGGAGCGGCAGGTAATGGTGGCAGTGCAGGCACTGCCATGCATCCAAGTGCCGCCAGCTATGCGAGAGAACTGTCCCGCGAGCGTGAACGAGAGCGCGAGATGTCGCGGGATCGGGAGCTCAAGGAGGCGATGCATGCCCGTCAATACGGCAATCAGTCGCGTGGCTCCAACTCCTCGGCGGGCAGCAAATCGGCAGCCGGATCATCGAGTCGTCCTGGCGCCGCATCGCCCTACTCCGCACTCTACTCGAAACACGCCAAGGAACATCCGAATTACGCGTACAACAAACGCTTTTTGGAGAGTCTGCCGGCCGGAATTGATTTCGAGGCGATTGCCAATGGCTTGCTGCACAAGTCGGTGAACAAGAGTCCGCGTTTCGAGGACTTCTTTCCGGGCCAGGACATGAGCGAGCTGTTTGCCAGCGCCAGCGATGCGGCTGGCGGTGGTGGCGGCGCCGGTGCATCGGCAGCAGCAGCAGCGGCGGCAGCAGCAGCCGCGTATGCGCCCGGAGCAATGCGAGAATCCCCGTTGATGAAAATCAAGCTGGAGCAACAGCAGGCGACAGAGTTGCCGCACGAAGATTGA
- Protein Sequence
- MIETSGHGWMGAPATGASVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMGAHQYANGQAHGSHFGSGNSSAAANGYHSAAVKMAAQNAALAPPDASNPLSTMTETLRRQILSXXXXXXXXXXXXXXTPHVQSMNMYKSPAYLQRSEIEDQVSAAAAAKHQQNERRGSENLPDLSALGLMGLPGLNVMPSQQAPHQRGGGGGGGAAGNGGSAGTAMHPSAASYARELSREREREREMSRDRELKEAMHARQYGNQSRGSNSSAGSKSAAGSSSRPGAASPYSALYSKHAKEHPNYAYNKRFLESLPAGIDFEAIANGLLHKSVNKSPRFEDFFPGQDMSELFASASDAAGGGGGAGASAAAAAAAAAAAYAPGAMRESPLMKIKLEQQQATELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01327085;
- 90% Identity
- iTF_01324033;
- 80% Identity
- -