Dnig015943.1
Basic Information
- Insect
- Drosophila nigromelanica
- Gene Symbol
- bab2
- Assembly
- GCA_004149445.1
- Location
- SCDR01000960.1:25941-28372[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-18 1.6e-14 53.9 0.0 1 43 59 102 59 104 0.95 2 2 1.3 4.5e+03 -2.0 0.1 29 42 380 394 380 395 0.89
Sequence Information
- Coding Sequence
- ATGATTGAGACGGGCGGACACGGCTGGATGGGCGCACCGGCAACAGGCGCTTCTGTGGCGGCAGACAGCTACCAATATCAGCTGCAGTCGATGTGGCAAAAGTGCTGGAACACCAACCAACAGAATCTGGTGCAACAGCTGCGCTTTCGGGAACGCGGCCCCCTCAAGTCCTGGCGTCCGGAAGCCATGGCCGAGGCCATATTTAGCGTACTCAAAGAGGGACTCTCCCTCTCGCAGGCCGCTCGCAAATACGATATACCCTATCCGACTTTCGTTCTATATGCAAATCGGGTGCACAACATGCTTGGTCCTTCGCTAGATGGCGGCACCGATCCGCGGCCCAAGGCCCGAGGTCGTCCACAACGCATCCTATTGGGCATGTGGCCCGAGGAGCTCATACGTAGCGTCATCAAGGCGGTCGTCTTCCGCGACTATCGCGAGATCAAGGAGGACATCAGTGCGCATCAATATGCCAATGGACAGGCACATGGCGCGCACTATGGTCCTGGCAACTCGGCGGCCAATGGCTACCACAGTGCGGCGGTCAAGATGGCCGCACAGAACGCGGCTCTGGCGCCGCCCGACGGCAGCAATCCGCTGAGCACCATGACGGAGACGCTGCGCCGCCAAATActctctcagcagcagcaacagcagcagcagtcgccgcACGTGCAGTCGATGAACATGTACAAGTCGCCGGCGTATTTGCAGCGCTCCGAGATTGAGGATCAggtgtcggcggcggcggcggtggccgCGGCGGCcaagcatcagcatcagcatcagcagagCGAGCGACGCGGCTCCGAGAACCTGCCCGATTTGAGCGCTTTGGGGCTGATGGGGCTGCCCGGCCTCAATGTGATGcccacgcagcagcagcagcaggcgccgcATCAGCGCGGCGCAAGTGGCAACGGTGGCAGCGCCGGCGCTGCCATGCATCCCAGCGCCGCCAGCTATGCGCGCGAATTGTCGCGGGAGCGGGAACGCGAGCGGGAAATGTCGCGGGATCGCGAGCTGAAGGAGGCGATGCATGCGCGCCAATATGGCAATCAGTCGCGTGGCTCCAACTCCTCCGGCGGCAGCAAGTCAACGGCAGCCGGGTCGTCGAGTCGTCCCGGCGCCGCGTCACCCTACTCCACGCACTATGCAAAGCACGCCAAGGAGCATCCCGGCTATGCGTACAACAAACGCTTCCTGGAAAGCCTCCCGGCGGGCATTGACTTTGAGGCGATTGCCAACGGGCTGCTGCAGAAGTCGGTGAACAAGAGTCCGCGCTTCGAGGACTTCTTCCCCGGCCAGGACATGAGCGAGCTCTTCGCCAGCGCCGAGGCGGGCGCCGGCGTCGGCGcgggcgctgcagcagcagcagcggccgcagccGCGGCAGCGGCATATGCGCCCGGTGGGGTGCGGGAATCGCCGCTGATGAAGAtcaagctggagcagcagcaggccgccGAGCTGCCGCACGAGGATTGA
- Protein Sequence
- MIETGGHGWMGAPATGASVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDISAHQYANGQAHGAHYGPGNSAANGYHSAAVKMAAQNAALAPPDGSNPLSTMTETLRRQILSQQQQQQQQSPHVQSMNMYKSPAYLQRSEIEDQVSAAAAVAAAAKHQHQHQQSERRGSENLPDLSALGLMGLPGLNVMPTQQQQQAPHQRGASGNGGSAGAAMHPSAASYARELSREREREREMSRDRELKEAMHARQYGNQSRGSNSSGGSKSTAAGSSSRPGAASPYSTHYAKHAKEHPGYAYNKRFLESLPAGIDFEAIANGLLQKSVNKSPRFEDFFPGQDMSELFASAEAGAGVGAGAAAAAAAAAAAAAYAPGGVRESPLMKIKLEQQQAAELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01327085;
- 90% Identity
- iTF_00598075;
- 80% Identity
- -