Spal001220.1
Basic Information
- Insect
- Scaptomyza pallida
- Gene Symbol
- bab2
- Assembly
- GCA_018152965.1
- Location
- JAECXP010000080.1:7418606-7420729[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-18 1e-14 54.0 0.0 1 43 59 102 59 104 0.95 2 2 0.2 5.2e+02 0.5 0.0 29 42 351 365 351 367 0.91
Sequence Information
- Coding Sequence
- ATGATTGAGACGAGCGGACATGGCTGGATGGGTGCACCGGCAACAGGCGCATCTGTGGCGGCAGACAGCTACCAGTATCAGTTGCAATCGATGTGGCAAAAGTGCTGGAATACCAACCAACAGAATCTGGTGCAACAGCTGCGCTTTCGCGAACGCGGACCACTCAAGTCCTGGCGACCCGAAGCCATGGCCGAGGCCATATTTAGTGTACTAAAAGAGGGACTCTCGCTGTCGCAGGCTGCACGCAAATACGATATACCCTATCCCACTTTTGTGCTCTATGCGAATCGTGTTCACAATATGCTTGGACCTTCTTTGGATGGCGGCACTGATCCACGGCCCAAGGCACGTGGACGTCCGCAACGCATTCTGCTGGGCATGTGGCCCGAAGAGCTCATACGCAGCGTGATCAAGGCCGTCGTCTTCCGCGACTATCGTGAGATCAAGGAGGAAATGGGCGCACATCAGTACGCAAATGGACAGGCACATGGCGCTCACTTCGGCTCGGGCAACTCGCCGGCTGCCAATGGCTATCACAGTGCTGTGAAGATGGCTGCTCAGAATGCTGCTTTAGCTCCACCCGATGGCAGTAATCCTCTCAGCACCATGACGGAAACACTTCGACGCCAGATACTCTCCCAGCAGCAACAACAACAGCAGCAGCAACAGCAATCGCCGCATGTGCAATCAATGAATATGTACAAGTCGCCGGCATACTTGCAACGATCCGAGATCGAGGATCAGGTGTCCGCAGCTGCGGCAGCCAAGCATCAGCAGAACGAGCGACGAGGCAGTGAGAATCTGCCAGATCTAACGCATCAGCGTGTAGGTGGCGGTGGGGGTGCAGCAGGTAATGGAGGCAGCGCAGGCGCTGCCATGCATCCCAGTGCCGCCAGCTATGCGAGAGAGCTCTCCCGAGAGCGTGAACGAGATCGCGAGTTGAAGGAGGCAATGCATGCGAGACAATATGGCAATCAGTCGCGTGGTAGCAATTCCTCAGTAAGCAGTAAATCGGCAGCAGGATCATCCAATCGTCCCGGTGCCGCATCCCCCTACTCCGCACTGTATTCGAAGCATGCCAAGGAGCATCCGAATTATGCGTACAACAAACGCTTCCTGGAGAGTCTTCCCGCGGGCATTGATTTCGAGGCCATTGCCAATGGTCTGCTGCACAAGTCCGTGAACAAGAGTCCGCGCTTCGAGGACTTCTTTCCGGGTCAGGATATGAGCGAACTCTTTGCCAGCACCAGTGATGCTGGAGCTGGAGCTGGTGCATCAGCCGCTGCAGCGGCGGCAGCTGCAGCCGCAGCCTATGCGCCGGCAGCACTGCGAGAATCGCCGCTAATGAAGATCAAGCTGGAGCATCAGCAGCAGGCGACTGAGTTGCCGCACGAGGATTGA
- Protein Sequence
- MIETSGHGWMGAPATGASVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEEMGAHQYANGQAHGAHFGSGNSPAANGYHSAVKMAAQNAALAPPDGSNPLSTMTETLRRQILSQQQQQQQQQQQSPHVQSMNMYKSPAYLQRSEIEDQVSAAAAAKHQQNERRGSENLPDLTHQRVGGGGGAAGNGGSAGAAMHPSAASYARELSRERERDRELKEAMHARQYGNQSRGSNSSVSSKSAAGSSNRPGAASPYSALYSKHAKEHPNYAYNKRFLESLPAGIDFEAIANGLLHKSVNKSPRFEDFFPGQDMSELFASTSDAGAGAGASAAAAAAAAAAAYAPAALRESPLMKIKLEHQQQATELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01327085;
- 90% Identity
- -
- 80% Identity
- -