Dkan005349.1
Basic Information
- Insect
- Drosophila kanekoi
- Gene Symbol
- bab2
- Assembly
- GCA_037075305.1
- Location
- JBAMCE010000141.1:11970560-11972409[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-18 1.1e-14 53.9 0.0 1 43 59 102 59 104 0.95
Sequence Information
- Coding Sequence
- ATGATTGAGACGAGCGGACACGGCTGGATGGGCGCACCGGCAACAGGCGCATCTGTGGCGGCAGACAGCTACCAGTATCAGCTGCAGTCCATGTGGCAGAAGTGCTGGAACACAAACCAACAGAATCTGGTGCAACAGCTGCGCTTTCGCGAACGCGGTCCGCTCAAGTCTTGGCGCCCGGAAGCCATGGCCGAGGCCATATTTAGCGTACTAAAGGAGGGCCTCTCGCTGTCGCAGGCCGCTCGTAAATACGATATACCCTATCCCACGTTCGTGCTCTATGCGAATCGTGTGCACAACATGCTGGGCCCCTCTTTGGACGGCGGCACCGATCCACGGCCCAAGGCACGCGGTCGCCCCCAGCGCATTCTGCTGGGCATGTGGCCCGAGGAGCTCATACGCAGCGTCATCAAGGCCGTCGTCTTTCGGGACTATCGCGAGATCAAGGAGGACATGAGTGCCCATCAGTATGCCAATGGACAGGCGCATGGTGCACACTTTGGTTCAGGCAACCCGTCAGCTGCTGCCAATGGGTATCACAGTGCAGCGGTGAAGATGGCGCCGCCCGACGGCAGCAATCCGCTGAGCACGATGACAGAGACGCTGCGCAGGCAGATACtctcccagcagcagcagcaccaacagcagcagcagcagcagcagtcgccgcATGTGCAGTCGATGAACATGTACAAGTCGCCAGCCTATTTGCAGCGCTCCGAGATCGAGGATCAGGTctcggcagcggcggcggtggcggcggcagccaAGCATCAGCAGAGCGAGCGCCGCGGCGCCGAGAATCTGCCCGATCTGAGCGCCTTGGGGCTGATGGGCCTGCCCGGCCTGAATGTGCTTCCCAGCACGCAGCAGGCTGGCCATCAGCGCGGCACATCCGGCGGCAACgggggcggcagcagcggagGATCCGGTGCAATGCATCCCAGTGCGGCCAGCTATGCGCGCGAACTATCGCGCGAGCGGGAGCGTGAGCGTGAGATGTCGCGGGATCGCGAGCTGAAGGAGGCAATGCACGCCCGCCAATATGGCAATCAGTCGCGCGGCTCCAATTCGTCGGCGGGCAGCAAATCGGCGGCCGGCTCGAGTCGGCCGGGCGCCGCATCACCCTATTCCGCGCACCACGCCCACGGACATTATGCCAAGCATGCCAAGGAGCAGCCCGGCTATGCGTACAACAAACGCTTTCTGGAGAGCCTGCCGGCGGGCATAGACTTTGAGGCGATTGCCAACGGGCTGCTGCAGAAGTCGGTTAACAAGAGTCCGCGCTTCGAGGACTTCTTTCCCGGCCAGGACATGAGCGAACTGTTCGCCGATGCCGGAGCTACCGGCGCCGGctccgcagcggcagcagcagcagcggccgcggcagcggctgcctatgcgccggcggcggcaatgCGCGAATCCCCATTGATGAAAAtcaagctggagcagcagcaggccgcCGAGCTGCCGCACGAGGATTGA
- Protein Sequence
- MIETSGHGWMGAPATGASVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMSAHQYANGQAHGAHFGSGNPSAAANGYHSAAVKMAPPDGSNPLSTMTETLRRQILSQQQQHQQQQQQQQSPHVQSMNMYKSPAYLQRSEIEDQVSAAAAVAAAAKHQQSERRGAENLPDLSALGLMGLPGLNVLPSTQQAGHQRGTSGGNGGGSSGGSGAMHPSAASYARELSREREREREMSRDRELKEAMHARQYGNQSRGSNSSAGSKSAAGSSRPGAASPYSAHHAHGHYAKHAKEQPGYAYNKRFLESLPAGIDFEAIANGLLQKSVNKSPRFEDFFPGQDMSELFADAGATGAGSAAAAAAAAAAAAAYAPAAAMRESPLMKIKLEQQQAAELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01327085;
- 90% Identity
- iTF_00490705; iTF_00506033; iTF_00530878;
- 80% Identity
- -