Rmor000674.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- bab1
- Assembly
- GCA_963680705.1
- Location
- OY796656.1:1429512-1464059[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-10 3.9e-08 34.7 0.0 1 39 380 419 380 423 0.90 2 4 4.8e-12 1.4e-09 39.3 0.1 1 39 434 472 434 475 0.95 3 4 1.3e-17 3.7e-15 57.2 0.0 1 45 489 534 489 534 0.98 4 4 1.7e-15 5e-13 50.4 0.0 1 39 541 580 541 584 0.94
Sequence Information
- Coding Sequence
- ATGTCTGGGCAGCAGTACTGTCTGCGATGGAACAATTACCAAAGCAATATGACATCAGTTTTTCACCAGCTTCTTCAGAACGAAGCTTTCGTAGACGTAACTTTAGCCTGTAACGATTTGTCATTAAAAGCTCACAAAGTAGTCTTGTCGGCCTGCTCGTCGTATTTCCAGAAACTCTTGTTAGAGAACCCCTGCAAGCACCCCACGATAATAATGCCCCAGGACGTCTGCTACGCCGACCTCAAATTCATCATCGAGTTCGTCTACAAGGGGGAGATTGACGTGTCGCAGGCTGAACTCCAGTCACTCCTGCGAACGGCGGACCAATTAAAGATCAAAGGCCTGTGCGAGTCGCCCGACGACAAAGAAAACTTCGAATTACCTCTGCCACTTTACTGCAAAGGTGGCAGGAAATCAGCCTCTCCCAAACACTTCAAGCTCCAGGACAATAATCGAAAACACAAATTCCGACGAACTAGCCTGCAGGAGCGACCGTCGGATGAAACGTCCGATAGAGACAACAAGGAGAACAAGGAGGGACAATCGTCGGACGAAGAATATGACATGCCAGTAGCTTTGGATGAAAGCAAAAGGAAGAGGCAGCAGCCGGAACAGACCAAACCACTCAACATGAGCAGCCATGGACTCATAACTGGACAGACAATCTTCTCCCAGTTCGGAGTGGACACAGATGACTTCCCACCCGAGCCTCCGGCGCCCTCGGCCATACCCGTCGGCCATGTGGACATGTCCGACCACTCGCCCACCCGGACCCTCCTCACCAACACCTCCATCCATCGGACCGACCTCTCGGATTCCACCAAGTACACGTTGGACATCAAGAAGGAGGCCGACATCAAGTTCGAAACGTTGCGGTCGTACGACCAGGACTCCCTCCTCGATATGGAATCGCACATGTCCGGACCCGATCACTCGATGGACAGCCACGACGATTGTGATAGGGCCCTGCATTCCAGCATGATGGTCCAGCAGGATTTCGTCGGGATGATGCCGGGTGTATCGAATAGATTAGATGTAAATAGTAGTGAAGATCAAGTACCTGGAACCAAAAATAATGGCCATACCGAAAATCTGCAGCACACACCCCGATCACACGGCGGTGGACCAAAAACCTGGACCCAGGAAGACATGGATATGGCCTTGGATGCCTTAAGAAATCACAATATGAGCCTCACAAAGGCTTCAGCGACTTACGGAATTCCCTCCACTACTTTATGGCAAAGAGCGCATAGGCTAGGCATAGACACTCCGAAGAAAGAAGGTCCGACGAAGTCCTGGACCGAAGAGAACCTCAACAGTGCCCTTGAAGCGTTGCGAACCGGTACCATCTCGGCGAATAAAGCTAGCAAAGCATACGGTATCCCTAGTAGCACCTTATACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCCTTCAATGCCGCTCCAACCACGTGGACGCCTGAAGACTTAGAGAAAGCACTGGAGTCGATCAGAACGGGACAGACGTCAGTACAGAAGGCCTCCACGGAGTTTGGGATACCCACGGGGACGCTTTACGGGAGGTGTAAACGGGAAGGAATCGAGTTGTCGAGGTCGAATCCCACGCCCTGGTCAGAGGATGCCATGGGCGAAGCACTGGAGGCTGTGAGGCTTGGGCACATGTCGATAAATCAAGCAGCAATTCACTACAACCTGCCTTACTCGTCGCTATATGGCCGATTCAAACGTGGGATAAAGTACGACTCGGATAACATTGAAGTAAATCAAGACAGCCAGTCCCAAATGGACGCCCACTCGTTCGGCATGGATTACACGACCTCATCCCACCAACAAATCCAATACCAAAACCAGAATAGCTGA
- Protein Sequence
- MSGQQYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSLLRTADQLKIKGLCESPDDKENFELPLPLYCKGGRKSASPKHFKLQDNNRKHKFRRTSLQERPSDETSDRDNKENKEGQSSDEEYDMPVALDESKRKRQQPEQTKPLNMSSHGLITGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMSDHSPTRTLLTNTSIHRTDLSDSTKYTLDIKKEADIKFETLRSYDQDSLLDMESHMSGPDHSMDSHDDCDRALHSSMMVQQDFVGMMPGVSNRLDVNSSEDQVPGTKNNGHTENLQHTPRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEVNQDSQSQMDAHSFGMDYTTSSHQQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01290529; iTF_01163303; iTF_01163013; iTF_00165961; iTF_01226537; iTF_01310254; iTF_01295874; iTF_00885810; iTF_00721907; iTF_01014164; iTF_00110457; iTF_00110703;
- 90% Identity
- iTF_01014164;
- 80% Identity
- iTF_01290529;