Rfun025118.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000015.1:24547265-24573416[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-10 3e-08 35.0 0.0 1 39 283 322 283 326 0.90 2 4 3.1e-12 8.1e-10 40.0 0.1 1 39 337 375 337 378 0.95 3 4 1.1e-17 2.8e-15 57.5 0.0 1 45 392 437 392 437 0.98 4 4 1.6e-15 4e-13 50.6 0.0 1 39 444 483 444 486 0.94
Sequence Information
- Coding Sequence
- ATGTACAAACCTACATCTACAATAACATCGCTCCTGCGAACGGCGGACCAATTAAAGATCAAAGGCCTGTGTGAATCGCCGGACGACAAAGAAAACTCCGAATTACCTCTGCCCCTTTACTGTAAAGGTGGCAGAAAATCCGCCTCCCCGAAACACTTTAAGCTGCAAGACAATAATCGAAAACACAAATACCGGCGGACCAGCCTGCAGGACCGAACGTCGGATGACACGGGCGACAGACTCGGCAAGGAAAAGAGAGAGGCGCAATCGTCGGACGAAGAAAATGACATGCCAGTAGCTTTGGATgaacacaaaaggaagaggCCGCAGCCGGAACAGACTAAACCACTCAACATGAGCAGCCATGGACTCATAACTGGACAGTTCGGAGTGGACACAGATGACTTCCCGCCGGAACCGCCGGCCCCCTCGGCCATCCCCGTCGGTCACGTGGACATGTCAGACCATTCGCCGACGCGCACCCTCTTCACCAACACTTCCATCCATCGGACCGACCTGTCCGATTCCACCAAATACACGCTGGACATTAAGAAGGAGGCCGACATTAAATTCGAAACGTTGCGCTCCTACGATCAGGACTCCCTCTTGGATATGGAATCGCACATGTCCGGGCCTGAACACTCGATGGACAGCCACGAGGACTGTGATAGAAGTATGCATCCCAGTATGATGGTCCAGCAGGATTTCGTTGGGATGATGCCTGGCGTTTCCAATAGATTAGATGTAAATAGTAGTGACGATCATGTACCTGGAACTAAAAATAATGGCCACTCTGAAAATTTACAACACATACCCCGATCTCATGGTGGTGGACCAAAAACCTGGACTCAGGAAGACATGGATATGGCCTTAGATGCTTTAAGAAATCATAATATGAGCCTCACAAAGGCTTCAGCAACTTATGGTATTCCCTCCACTACTTTATGGCAAAGAGCACATAGGTTAGGAATAGACACACCAAAGAAAGAGGGTCCCACAAAGTCATGGACAGAGGAAAACCTCAATAATGCTCTCGAAGCATTAAGAACTGGAACCATTTCAGCGAACAAAGCTAGTAAAGCTTatgGTATCCCCAGTAGCACATTGTATAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCCTTCAATGCGGCTCCAACAACCTGGACCCCTGAAGATTTGGAAAAAGCACTAGAATCAATCAGAACTGGGCAGACATCTGTACAGAAGGCATCAACGGAATTCGGTATACCTACAGGAACACTCTACGGAAGGTGTAAAAGGGAAGGCATTGAATTATCACGTTCCAATCCAACACCTTGGTCAGAAGATGCCATGGGGGAGGCTTTAGAAGCTGTGAGGCTGGGACACATGTCGATAAACCAAGCAGCAATTCATTACAACCTGCCTTACTCATCTCTTTACGGGCGTTTCAAGCGGGGCATAAAGTACGACGCAGACAACATAGAAGTAAATCAGGATAGCCAATCCCAAATGGAAGCCCATTCGTTCAGCATGGACTACAGTGCCACCCCCCACCAACAAATCCAATACCAGAATCAGAACAGCTGA
- Protein Sequence
- MYKPTSTITSLLRTADQLKIKGLCESPDDKENSELPLPLYCKGGRKSASPKHFKLQDNNRKHKYRRTSLQDRTSDDTGDRLGKEKREAQSSDEENDMPVALDEHKRKRPQPEQTKPLNMSSHGLITGQFGVDTDDFPPEPPAPSAIPVGHVDMSDHSPTRTLFTNTSIHRTDLSDSTKYTLDIKKEADIKFETLRSYDQDSLLDMESHMSGPEHSMDSHEDCDRSMHPSMMVQQDFVGMMPGVSNRLDVNSSDDHVPGTKNNGHSENLQHIPRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDADNIEVNQDSQSQMEAHSFSMDYSATPHQQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289681;
- 90% Identity
- iTF_01014164;
- 80% Identity
- -