Lqua012310.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776673.1:225115237-225138448[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.2e-11 4.8e-08 34.7 0.0 1 39 364 403 364 407 0.90 2 4 3.2e-12 1.7e-09 39.4 0.1 1 39 418 456 418 459 0.95 3 4 8.5e-18 4.5e-15 57.2 0.0 1 45 473 518 473 518 0.98 4 4 1.2e-15 6.1e-13 50.4 0.0 1 39 525 564 525 568 0.94
Sequence Information
- Coding Sequence
- ATGAGGCGAGATAATGGAGACGTTAGGGAAAGTCATACAACGCCATTGCCGTTTATTTGGAGAATTACTTTTTATATCGAAAAGTTTCACTGTTTTCAGCCTATGGGTACTTTCAATGTGGAAAAAaCCCATGCTCTGAATCAAAATGTACCAGAAGATGATAATTTAGAAGGGGCTTCAAGTGTAAATGAAAATTTGGAGGGAAATAATGATATCAATAATATCGATGACCCTAAAGGAATAGTAGTTAATAACTCGTCGCTTCTGCGAACGGCGGACCAATTAAAGATCAAAGGCCTGTGCGAGTCGCCCGACGACAAAGAAAATTTCGAATTACCTCTGCCACTTTACTGCAAAGGTGGCAGGAAGTCTACCTCCCCTAAGCACTTTAAACTACAGGACAATAATCGAAAACACAAATTCCGGCGATCTAGCCTGCAGGACAGACCGTCGGATGAAATATCTGATAGAGAGAACAAGGAAAACAAGGAGGGACAATCGTCGGACGAGGAAAATGACATGCCAGTAGCTTTGGATGAAATCAAAAGGAAGAGGCTGCAGCCGGAACAGACCAAACCGCTCAACATGAGCAGCCATGGACTCATCACCGGACAGACAATCTTCTCCCAGTTCGGAGTGGACACAGATGACTTCCCACCAGAACCTCCGGCGCCCTCAGCCATACCCGTCGGCCATGTGGACATGTCTGACCACTCGCCCACCCGGACCCTGCTCACTAACACCTCCATCCATCGAACCGACCTATCGGACTCCACCAAGTACACTTTGGATATTAAGAAGGAGGCTGACATCAAGTTCGAAACGTTACGGTCCTACGACCAAGACTCCCTCCTGGATATGGAATCACACATGTCCGGGCCGGATCATTCGATGGACAGCCACGACGATTGTGATAGGACCCTCCACACTAGCATGATGGTCCAGCAGGATTTTGTTGGGATGATGCCGGGCGTTTCAAATAGATTAGATGTAAATAGTAGTGATGATCATGTACCTGGAACCAAAAACAATGGCCATACCGAAAACTTGCACACACCCCGAACACACGGCGGGGGACCAAAAACTTGGACTCAGGAAGATATGGACATGGCCTTAGATGCCTTAAGAAATCACAATATGAGCCTCACAAAGGCTTCAGCGACTTATGGAATTCCCTCCACTACTCTATGGCAAAGAGCGCATAGGCTAGGCATAGATACACCAAAAAAAGAAGGTCCCACAAAGTCTTGGACAGAAGAGAACCTCAACAGTGCCCTTGAAGCTCTGCGAACTGGTACCATTTCAGCGAATAAAGCTAGCAAAGCATATGGTATCCCTAGCAGCACTTTATACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCCTTCAATGCCGCTCCAACCACATGGACGCCTGAAGACTTAGAAAAAGCCTTAGAATCAATTAGGACTGGACAAACGTCGGTGCAAAAAGCCTCCACGGAGTTTGGTATACCTACTGGGACGCTTTACGGAAGGTGTAAAAGGGAAGGAATCGAGTTGTCCAGGTCGAATCCGACGCCCTGGTCGGAGGACGCTATGGGTGAAGCACTGGAGGCTGTGAGGTTAGGGCATATGTCTATAAATCAAGCAGCAATTCACTACAACCTGCCTTATTCGTCGTTATATGGTCGATTTAAACGTGGAATAAAATACGATTCAGATAATATAGAAGTAAACCAAGATAGCCAGTCGCAGATGGACACCCATTCCTTCGGCATGGACTACACAACCTCGTCCCACCCACAAATCCAATACCAGAACCAGAACAGCTGA
- Protein Sequence
- MRRDNGDVRESHTTPLPFIWRITFYIEKFHCFQPMGTFNVEKTHALNQNVPEDDNLEGASSVNENLEGNNDINNIDDPKGIVVNNSSLLRTADQLKIKGLCESPDDKENFELPLPLYCKGGRKSTSPKHFKLQDNNRKHKFRRSSLQDRPSDEISDRENKENKEGQSSDEENDMPVALDEIKRKRLQPEQTKPLNMSSHGLITGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMSDHSPTRTLLTNTSIHRTDLSDSTKYTLDIKKEADIKFETLRSYDQDSLLDMESHMSGPDHSMDSHDDCDRTLHTSMMVQQDFVGMMPGVSNRLDVNSSDDHVPGTKNNGHTENLHTPRTHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEVNQDSQSQMDTHSFGMDYTTSSHPQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289681;
- 90% Identity
- iTF_01014164;
- 80% Identity
- -