Rbic066283.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010005509.1:540748-569762[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-10 4e-08 34.9 0.0 1 39 311 350 311 354 0.90 2 4 5.9e-12 1.4e-09 39.5 0.1 1 39 365 403 365 406 0.95 3 4 1.6e-17 3.7e-15 57.4 0.0 1 45 420 465 420 465 0.98 4 4 2.1e-15 5.1e-13 50.6 0.0 1 39 472 511 472 515 0.94
Sequence Information
- Coding Sequence
- ATGCGATCGCAGGCCGAAGTTGCTGGCTCATTTCAAGAAGAATTTCCTGATTTACCGCCTATATCCCAAGgtacaattagcaaaattgaaaagcagTTTCGCGAAAATGAACATTCACTTCTGCGAACGGCGGACCAATTAAAGATCAAAGGCCTGTGTGAATCACCCGACGACAAAGAAAACTTCGAATTACCTCTGCCTCTTTATTGTAAAGGTGGCAGGAAATCCGTCTCCCCTAAACACTTTAAAGTACAGGACAATAATCGAAAACACAAATTCCGACGATCGAGCCTGCAGGACCGACCGTCGGATGAAACATCTGATAGAGAGAACAAGGAAAACAAAGGACAATCGTCGGACGAAGAAAATGACATGCCAGTAGCTTTGGATGAAATCAAAAGGAAGAGGCTGCAGCCGGAACAGACTAAACCACTCAACATGAGCAGCCATGGACTCATAACTGGACAGTTCGGAGTGGACACAGATGACTTCCCACCAGAACCTCCGGCGCCCTCGGCCATTCCCGTCGGTCATGTGGACATGTCTGATCATTCACCGACCCGAACCCTTCTTACCAACACCTCCATCCATCGAACGGACCTCTCAGACTCCACCAAATATACCTTGGATATCAAGAAGGAGGCCGAcattaaattcgaaacgttGCGGTCGTACGACCAAGACTCCCTCCTGGATATGGAATCGCACATGTCTGGGCCCGATCATTCGATGGATAGCCACGACGATTGTGATAGGAATCTTCATTCCAGCATGATGGTCCAGCAGGACTTTGTTGGGATGATGCCAGGTGTGTCAAATAGATTAGATGTAAATAGTAGTGAAGATCAAGTACCTGGAACCAAAAATAATGGCCATACCGAAAATTTACAGCACACACCCCGATCGCACGGCGGTGGACCAAAAACCTGGACTCAGGAAGATATGGATATGGCCTTAGATGCCTTAAGAAATCACAATATGAGCCTCACAAAGgcTTCAGCGACTTACGGAATTCCCTCCACTACTTTATGGCAAAGAGCGCATAGGCTAGGCATAGATACACCAAAAAAAGAAGGTCCCACAAAGTCTTGGACAGAAGAAAACCTCAATAGTGCCCTTGAAGCCTTACGAACTGGTACCATTTCTGCAAACAAAGCTAGCAAAGCATATGGTATCCCTAGTAGCACATTATACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCCTTCAATGCCGCTCCAACCACATGGACGCCTGAAGACTTAGAAAAAGCATTAGAATCAATCAGAACAGGGCAGACGTCGGTACAAAAAGCCTCCACAGAATTCGGTATACCTACAGGAACACTATATGGTAGATGTAAAAGGGAAGGTATCGAGTTGTCAAGGTCGAATCCCACACCCTGGTCAGAGGACGCTATGGGTGAAGCACTAGAGGCTGTGAGGCTTGGGCACATGTCTATAAATCAAGCTGCAATTCACTACAACCTGCCTTACTCATCGTTATATGGTCGTTTTAAACGAGGAATAAAATATGACTCGGATAACATAGAAGTAAACCAAGACAGCCAGTCCCAAATGGATGCCCATTCCTTCGGTATGGATTATACAACCTCATCTCACCAACAAATCCAATACCAGAACCAGAGTAGCTGA
- Protein Sequence
- MRSQAEVAGSFQEEFPDLPPISQGTISKIEKQFRENEHSLLRTADQLKIKGLCESPDDKENFELPLPLYCKGGRKSVSPKHFKVQDNNRKHKFRRSSLQDRPSDETSDRENKENKGQSSDEENDMPVALDEIKRKRLQPEQTKPLNMSSHGLITGQFGVDTDDFPPEPPAPSAIPVGHVDMSDHSPTRTLLTNTSIHRTDLSDSTKYTLDIKKEADIKFETLRSYDQDSLLDMESHMSGPDHSMDSHDDCDRNLHSSMMVQQDFVGMMPGVSNRLDVNSSEDQVPGTKNNGHTENLQHTPRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEVNQDSQSQMDAHSFGMDYTTSSHQQIQYQNQSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289681;
- 90% Identity
- iTF_01014164;
- 80% Identity
- -