Pder016442.1
Basic Information
- Insect
- Pediacus dermestoides
- Gene Symbol
- bab1
- Assembly
- GCA_963942485.1
- Location
- OZ012630.1:301718-313403[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-11 1.4e-08 34.7 0.0 1 39 370 409 370 413 0.90 2 4 2.6e-12 1.3e-09 38.0 0.1 1 39 424 462 424 465 0.95 3 4 1.2e-18 6.3e-16 58.2 0.0 1 45 479 524 479 524 0.98 4 4 6.8e-17 3.5e-14 52.7 0.0 1 39 531 570 531 574 0.94
Sequence Information
- Coding Sequence
- ATGTCTGGCCAGCATTACTGCCTACGATGGAACAATTACCAGACGAACATGACATCCGTGTTCCACCAACTGCTCCAAAATGAAGCCTTCGTTGACGTCACGTTGGCCTGCAACGATTTGTCGTTGAAAGCACACAAAGTGGTTCTCTCAGCCTGCTCTTCGTATTTCCAGAAACTTCTTTTGGAAAACCCCTGCAAACATCCGACAATCATCATGCCACAAGACGTTTGTTACACAGATCTGAAATTCATCATAGAATTCGTTTACAAAGGAGAAATCGACGTTTCACAAACCGAACTTCAGTCACTTCTACGCACCGCCGACCAGCTGAAAATCAAAGGTCTATGCGAGTCGCCCGAAGACAAAGAAAACTCCAACTCACCAACACCACAGCTAACCAAAGCCGGAAGAAAATCCTCGTCGCCCAAACAACTAAAACTCCAAGACAATAACAGAAAATTCAGGTTAAAACGCAGAAACAATCCTTCGGAGGACGCAGACAAAGACAGAGCCAAAGACACGTCAGATGAAGAAAATGACATGCCAGTAGCGTCGGATGAAGCAAAGCGGAAAAGGTTTGAGCCTGAGCAGACCAAACCACTAAACATGAGCAGCCATGGACTGGTCACAGGACAAACGATCTTCTCGCAATTCGGTGTGGACACTGACGACTTTCCACCGGAACCACCAGCACCCTCTGCGATTCCTGTTGGTCACATGGACATGCAGGATCATTCGCCGACGCGTACTCTTCTAACCAACACCTCGATACACAGGACTGACCTCTCGGATTCGACGAAGTATACCATGGATATCAAAAAAGAAACCGATATTAAGTTTGAGACTTTGCGGTCTTACGACCAGGATTCGCTCTTGGAAATTGACTCTAGGATGTCGGGGCCGGACCATAGTTTGGACAGTCATGAAGATGGGGAGCAAGGGTATAATAGTATGATGATTGCTCAGGATTATGTCAGGATAGTTCCAGGGATTTCCAATCGACTAGATGGAAGCGATGACTTGTCCGGGTTGAAGAACAGTGAGCACTCGGAGGGTCTCCAACATGGTACCTCAAGAGCTCACGGTGGCGGTGGTCCGAAAACTTGGACGCAAGAAGATATGGACATGGCCTTGGATGCCCTTAGAAACCACAACATGAGCCTTACtaaaGCCTCTGCAACTTACGGTATTCCCTCCACTACTCTATGGCAACGTGCCCATCGCCTCGGCATCGACACCCCGAAAAAAGAGGGTCCCACCAAATCCTGGACTGAAGAGAACTTAAACAGTGCCCTTGAAGCCCTTAGAACCGGAACAATTTCCGCCAACAAAGCCAGTAAAGCTTTCGGAATCCCAAGTAGTACCTTATACAAAATAGCGAGACGAGAAGGAATAAGACTGGCAGCCCCTTTCAATGCAGCCCCAACCACATGGACACCAGAAGACTTGGAAAAGGCTTTAGAGTCCATCAGGTCTGGACAAACTTCGGTTCAGAAGGCTTCGACTGAGTTTGGAATACCGACGGGGACGCTGTATGGGAGGTGTAAGCGGGAGGGGATTGAGCTGTCTCGGTCGAATCCTACGCCTTGGTCCGAGGATGCGATGAGTGAAGCTTTGGAAGCCGTGCGACTGGGCCACATGTCAATCAATCAAGCAGCAATCCACTACAATCTGCCTTATTCGTCCCTCTACGGAAGATTCAAGCGCGGCATCAAATACGATTCGGAGAATATTGAAATGAACCAAGACAGTCAGTCGTCGCACATGGATGCTCATTCGATTGGAATGGACTACACAAACACCCATCCACAACAAATCCAATATCAGAGCCAGAACAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQTNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYTDLKFIIEFVYKGEIDVSQTELQSLLRTADQLKIKGLCESPEDKENSNSPTPQLTKAGRKSSSPKQLKLQDNNRKFRLKRRNNPSEDADKDRAKDTSDEENDMPVASDEAKRKRFEPEQTKPLNMSSHGLVTGQTIFSQFGVDTDDFPPEPPAPSAIPVGHMDMQDHSPTRTLLTNTSIHRTDLSDSTKYTMDIKKETDIKFETLRSYDQDSLLEIDSRMSGPDHSLDSHEDGEQGYNSMMIAQDYVRIVPGISNRLDGSDDLSGLKNSEHSEGLQHGTSRAHGGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMSEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSENIEMNQDSQSSHMDAHSIGMDYTNTHPQQIQYQSQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289681;
- 90% Identity
- iTF_01163303;
- 80% Identity
- iTF_01163303;