Malt007620.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073426.1:142849672-142858208[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-10 2.5e-08 34.9 0.0 1 39 292 331 292 335 0.90 2 4 4.5e-12 8.8e-10 39.6 0.1 1 39 346 384 346 387 0.95 3 4 1.2e-17 2.4e-15 57.5 0.0 1 45 401 446 401 446 0.98 4 4 1.6e-15 3.2e-13 50.6 0.0 1 39 453 492 453 496 0.94
Sequence Information
- Coding Sequence
- ATGCCTGTGGGAGATTTTTATTGCGAtgtgtggctggaaaatTCGATCCTGCGAACGGCGGACCAATTAAAGATCAAAGGCTTGTGCGAGTCGCCCGACGACAAAGAAAACTCCGAATCGCCCCTGCCCCTGTACTGCAAAGGTGGCAGGAAGTCCGCCTCCCCCAGGCACTTCAGGCTAGCGGACAGCGTCAACAGGAGGGCCAAATACCGCCGCACCAGCCTGCAGGAGCGACCGTCGGATGAGACACCGGGCGGCTGCAGGGAGGGCAAAGAGAAGGGCCACTCGTCGGATGAGGAAAATGACATGCCAGTAGCTCTGGATGAGCACAAGAGGAGCAGGCACCAGCCCGAGCAGACCAAACCACTCAACATGAGCAGCCATGGACTCATGACCGGACAGACAATCTTCTCCCAGTTCGGAGTGGACACCGATGACTTCCCACCGGAACCTCCGGCGCCTTCGGCCATCCCCGTGGGCCACGTGGACATGTCGGACCACTCTCCCACCCGTTCCCTCCTCACCAACACCCCCATCCATCGAACAGACATCTCGGACTCCACCAAGTACACGCTGGACATCAAGAAGGAGGCCGACATTAAGTTCGAAACGTTGCGGTCCTACGACCAGGACTCCCTTTTGGACATGGAGTCGCACATGTCCGGCCCTGACCATTCCATGGACAGCCACGACGATTGTGATAGAGGACTGCACCCCAGCATGATGGTGCAGGATTTTGTGGGAATGATGCCGGGTGTTTCGAATAGATTAGATGTAAATAGTGAAGAACAAGTACCTGGAACCAAAAATAATGGCCATAATGAAAACCTACAACACACACCCCGGTCACATGGTGGTGGACCAAAAACCTGGACTCAGGAAGATATGGATATGGCCTTAGATGCCTTAAGAAATCATAATATGAGCCTTACAAAGgCTTCGGCGACTTATGGTATTCCCTCCACTACTTTATGGCAAAGAGCACATAGACTAGGCATAGACACTCCCAAAAAGGAAGGACCGACGAAATCTTGGACAGAAGAGAACCTGAACAGTGCTTTAGAAGCTTTGCGGACTGGCACCATCTCAGCGAACAAAGCCAGTAAGGCGTACGGTATACCCAGCAGCACTCTTTACAAAATAGCGAGACGAGAAGGAATAAGACTGGCAGCCCCTTTCAATGCAGCCCCGACCACGTGGACACCAGAGGATTTGGAGAAGGCTTTAGAGTCCATCAGGACGGGACAAACGTCTGTACAGAAGGCTTCTACTGAGTTTGGCATTCCCACTGGAACGCTGTACGGAAGGTGTAAGAGGGAAGGCATTGAATTGTCTAGATCGAACCCTACGCCTTGGTCTGAGGATGCGATGGGCGAAGCGTTGGAAGCTGTGAGATTGGGACATATGTCCATAAATCAAGCAGCGATTCACTACAACCTGCCTTATTCTTCGCTATATGGCCGTTTCAAGCGGGGAATAAAATACGACTCGGATAACATTGAAGTAAACCAAGACAGTCAGTCGCAAATGGACGCCCATTCCTTCGGAATGGACTACACCGCCACCTCTCACCAACAAATTCAGTACCATAACCAGAATAGCTGA
- Protein Sequence
- MPVGDFYCDVWLENSILRTADQLKIKGLCESPDDKENSESPLPLYCKGGRKSASPRHFRLADSVNRRAKYRRTSLQERPSDETPGGCREGKEKGHSSDEENDMPVALDEHKRSRHQPEQTKPLNMSSHGLMTGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMSDHSPTRSLLTNTPIHRTDISDSTKYTLDIKKEADIKFETLRSYDQDSLLDMESHMSGPDHSMDSHDDCDRGLHPSMMVQDFVGMMPGVSNRLDVNSEEQVPGTKNNGHNENLQHTPRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEVNQDSQSQMDAHSFGMDYTATSHQQIQYHNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289681;
- 90% Identity
- iTF_01226537; iTF_00721907; iTF_01310254; iTF_01295874; iTF_01289681; iTF_01290529; iTF_00885810; iTF_00110457; iTF_00110703;
- 80% Identity
- -