Amos024373.1
Basic Information
- Insect
- Aromia moschata
- Gene Symbol
- -
- Assembly
- GCA_029963805.1
- Location
- JAPWTK010000512.1:270948-282089[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.7e-11 1.7e-08 34.8 0.0 1 39 321 360 321 364 0.90 2 4 1.5e-12 4.4e-10 39.9 0.1 1 39 375 413 375 416 0.95 3 4 5.3e-18 1.6e-15 57.4 0.0 1 45 430 475 430 475 0.98 4 4 7.3e-16 2.1e-13 50.5 0.0 1 39 482 521 482 525 0.94
Sequence Information
- Coding Sequence
- ATGAGAGCCTTTCGAAGGCACCAAAACAACCCCCTCCACCCCACACAAGCAACAGTCCTCATCGCGCCCTCCTCTTTGCGCCGTACTCCAAACGAACGAAGGAGAAAGTTATTCGCGCCCGCCCGCCCCCTTTTTCATCCCCTATTAAAGCACCCCGATCTTTTGCAGTCGCTGCTGCGGACGGCGGACCAGCTGAAGATCAAAGGGCTGTGCGAATCGCCGGAGGACAAGGAGAACTCGGAGCTGCCCCTGCCCCTCTTCTGCAGAGGCACTAGAAAGTCGGGGTCTCCCAAGCACTTCCGACCGCTGGACAGCAACCGCAGACACAAGTACAGGAGGTCTGCCACGCAAGAGGGTCCGTCGGATGAGGTCAGCGAGGAAGACGCGAGAAGGGAGAAGAGAGAGGGACAGTCGTCGGACGAGGAAAATGACATGCCAGTAGCTCTGGATGAGCACAAGAGGAAGAGGGCGCAACCGGAACAGACAAAACCACTCAACATGAGCAGCCATGGACTCATCACTGGACAGACGATCTTCTCTCAGTTCGGCGTGGACACGGACGACTTCCCCCCGAGCCGCCGGCACCCTCCGCCATCCCCGTCGGCCACGTGGACATACCTCTCGGACTCCACCAAGTACACGCTGGACATCAAGAAGGAGGCGGACATCAAGTTCGAGACGTTGCGCTCCTACGACCAGGACTCGCTGCTCGACATGGAGTCGCACATGTCCGGTGGGCCTGATCACTCGATGGACAGCCACGAGGACTGCGAGAGGAGCCTCCACGCCGGCGGCATGCTGCAGGCGCGCCAACAGCAGGACTTCGTCGGCATGATGCCCGGCGTCTCGAATAGATTAGATGTAAATAGTAGTGAAGACCACGTACCTGGATTAAAAAACAACGGCCAATCCGAAAGCTTACATTTACCCCGGTCGCACGGCGGCGGACCAAAGACTTGGACTCAGGAAGACATGGATATGGCCTTAGATGCCTTAAGAAACCACAACATGAGCCTTACAAAGGCTTCAGCAACTTACGGAATTCCCTCCACTACTTTATGGCAAAGAGCACATAGGCTAGGTATCGACACACCGAAGAAAGAAGGACCTACGAAATCCTGGACAGAAGAGAACCTCAACAACGCCCTCGAGGCATTGCGAACTGGAACTATTTCGGCGAACAAGGCTAGCAAGGCGTATGGAATCCCTAGCAGCACCCTCTACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCGGCGCCGTTCAACGCGGCGCCGACGACGTGGACCCCCGAGGACCTGGAGAAGGCGCTGGAATCGATCCGGACGGGACAGACCTCCGTGCAGAAGGCCTCCACGGAGTTCGGCATACCGACGGGCACGCTCTACGGCAGGTGTAAGCGCGAGGGCATCGAGTTGTCCCGGTCGAACCCCACGCCCTGGTCCGAGGACGCGATGGGCGAGGCCCTCGAGGCCGTGAGGCTGGGACACATGTCCATCAACCAAGCGGCGATTCACTACAACTTGCCTTACTCGTCGCTGTACGGCCGCTTCAAACGCGGCATAAAGTACGACTCGGACAACATAGAGATCAACCAGGACAGCCAGTCGCAGATGGACGCACACTCCTTCGGCATGGACTACAGCGCGGTGCCGCACCAACCACAGATCCAATACCAGAACCAGAACAGCTGA
- Protein Sequence
- MRAFRRHQNNPLHPTQATVLIAPSSLRRTPNERRRKLFAPARPLFHPLLKHPDLLQSLLRTADQLKIKGLCESPEDKENSELPLPLFCRGTRKSGSPKHFRPLDSNRRHKYRRSATQEGPSDEVSEEDARREKREGQSSDEENDMPVALDEHKRKRAQPEQTKPLNMSSHGLITGQTIFSQFGVDTDDFPPSRRHPPPSPSATWTYLSDSTKYTLDIKKEADIKFETLRSYDQDSLLDMESHMSGGPDHSMDSHEDCERSLHAGGMLQARQQQDFVGMMPGVSNRLDVNSSEDHVPGLKNNGQSESLHLPRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEINQDSQSQMDAHSFGMDYSAVPHQPQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289681;
- 90% Identity
- -
- 80% Identity
- -