Phis000731.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004692.1:12391369-12403277[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-10 2.8e-08 35.0 0.0 1 39 287 326 287 330 0.90 2 4 5.6e-12 9.6e-10 39.6 0.1 1 39 341 379 341 382 0.95 3 4 1.5e-17 2.6e-15 57.5 0.0 1 45 396 441 396 441 0.98 4 4 2.1e-15 3.5e-13 50.6 0.0 1 39 448 487 448 491 0.94
Sequence Information
- Coding Sequence
- ATGATACACATTCACTATGTGcagTCGATCCTGCGAACGGCGGACCAATTAAAGATCAAAGGCCTGTGTGAGTCGCCCGACGACAAAGAAAACTCGGAATCGCCTCTGCCTCTCTACTGCaaagGTGGCCCCAAGTCGGCCTCCCCCAGGCACTTCCGGCTAACGGCGGCGGATCGGCGACCCAGCAAGTACCGGCGCACCAGCCTGCAGGAGCGCCCGTCGTCGGATGAGACACCCAGGGAGCAGCTGGGCAGGGAGAAGGGCCACCCGTCGGAGGACGAGGAGCATGACATGCCAGTAGCTCTGGATGAGCACAAGAGAGGCAGGCAGCCCGAGCAGACTAAACCACTCAACATGAGCAGCCATGGACTCATGACCGGACAGACAATCTTCTCCCAGTTCGGAGTGGACACAGATGACTTCCCCCCAGAGCCCCCGGCACCTTCAGCTATCCCCGTGGGCCATGTGGACATGTCGGATCATTCGCCCACCCGCTCCCTGCTAATAAACACCCCCATCCACCGGACCGACATCTCGGACTCTACCAAGTACACACTGGACATCAAGAAGGAGGCCGACATCAAGTTCGAGACGTTAAGATCCTTCGACCAAGACTCCCTGTTAGATATGGAGTCGCACATGTCAGGGCCGGATCACTCGATGGACAGCCATGACGATTGTGATAGAACCCTGCATCCGGGCATGATGTTACAGCAGGATTTCGTAGGGATGATGCCAGGTGTTTCAAATAGATTAGATGTAAATAGTGATGAACAAGTACCTGGAACTAAAAACAATGGCCATAACGAAAATCTACAACACACACCCCGATCACACGGTGGTGGACCAAAAACATGGACTCAGGAAGATATGGACATGGCCTTAGATGCCTTAAGAAATCACAATATGAGCCTCACAAAGGCATCAGCTACTTATGGTATTCCCTCCACTACTTTATGGCAAAGAGCGCATAGACTAGGCATAGACACTCCAAAGAAAGAAGGACCGACGAAATCTTGGACCGAAGAAAACCTTAACAGTGCTCTGGAAGCTTTGCGCACTGGAACCATTTCAGCTAATAAGGCCAGCAAAGCATACGGTATTCCCAGTAGCACCTTATACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCTCCGTTCAATGCAGCTCCAACTACATGGACACCAGAAGATTTAGAAAAAGCTTTGGAATCAATCCGAACAGGGCAAACGTCTGTGCAAAAAGCTTCTACAGAATTCGGTATCCCCACAGGAACACTTTATGGCAGGTGCAAGAGGGAGGGTATAGAGTTGTCAAGGTCAAATCCTACACCTTGGTCGGAAGATGCTATGGGAGAAGCTCTAGAGGCTGTGAGGTTGGGACACATGTCAATAAATCAAGCAGCAATTCACTACAACCTGCCTTACTCATCACTCTATGGCCGATTCAAGCGTGGAATAAAGTACGACTCGGACAATATAGAAGTCAATCAGGACAGCCAGTCACAAATGGACGCCCATTCGTTTGGCATGGACTACAGTGCTACCTCCCACCAACAAATTCAGTATCAAAACCAGAACAGCTGA
- Protein Sequence
- MIHIHYVQSILRTADQLKIKGLCESPDDKENSESPLPLYCKGGPKSASPRHFRLTAADRRPSKYRRTSLQERPSSDETPREQLGREKGHPSEDEEHDMPVALDEHKRGRQPEQTKPLNMSSHGLMTGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMSDHSPTRSLLINTPIHRTDISDSTKYTLDIKKEADIKFETLRSFDQDSLLDMESHMSGPDHSMDSHDDCDRTLHPGMMLQQDFVGMMPGVSNRLDVNSDEQVPGTKNNGHNENLQHTPRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEVNQDSQSQMDAHSFGMDYSATSHQQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289681;
- 90% Identity
- iTF_01014164;
- 80% Identity
- -