Phis025870.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963924545.1
- Location
- OZ004696.1:29320626-29344543[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-112 1.1e-107 361.4 31.1 1 300 8 294 8 294 0.96 2 2 0.0093 5.3e+02 1.3 0.2 120 161 292 333 291 335 0.90
Sequence Information
- Coding Sequence
- ATGGAAGATATAGTAAATAATGCAGAGGCTAGACTTTGGGCAAAGAGACAGGCAAGGGCAGAAGCGAGAGAAATACGTATGCGTGAACTGGAGCGACAACAAAAAGAGCAAGAAGAGAATGCAGATAGACAATTTGATATGTTGGTTGAGCCGATGGTCAGGGCTCCCAGAAGTGCTACCAGTGGTAACCGGTATTTGTCTAGTCGAAGAAGTTCTGAAGATTCCTTGGAAGATGGAGGCAGTCTTAGAGAATTAAGGCATGAACTCAAGGAGGTCGAGGAAAAATTCCGAAAAGCTATGATTGCTAATGCTCAACTTGATAATGACAAAGCGGCACATACATACCAGTTGGAGCTGTTAAAAGATAGGTTACAAGAATTAGAAGAACAACATTCCCAATTAAAAAGGGAGCATCGTGAAAAATGCAGAGATCACGATCAACTAAAAAGGTTATGTACCAAATTAAAAGAAGACTTTACTATGGCTAAAGCTGAACTAGAGGAAAGAGATCAGTTAATTGCAGAGAAAGGTCTAATTATTGTGACAGCAGAGGTACCTCCTGATGAAGATGAGTTAATACAACCTTTCAAAAAATCCTTAATTAGCATAGAAAATGCCCAGTTATTAGAAAATGCAGGTGATGGAAGTCTAgatgtACGGTTAGCCAAGTTTGTTAAAGAGAAGAGTGAATTAGAAGACCAAATTAGCcatttaaaattagaattagAAGAAGAAAAGAGTAAAAGAAGAAAACACAGCTCAGCAGATCTTCTTAATGGACCATTCTCAGAGTATGATTATGACGATGTCCAAAGAGAAACTAGTAAACAACTTGCTGACTATAAATTTAGAGCACAGAAGGCTGAACAAGATGTAGCCACACTACAAGCTACTGTTGCGAGACTTGAAAGTCAAGTTATCAGGTATAAAACTGCAGCAGAAATATCTGAACAATCAGAAGAGGCGCTTAAAGCGGAAAAAAGGAAATTGCAAAGAGAGGTATGTACCTAA
- Protein Sequence
- MEDIVNNAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLVEPMVRAPRSATSGNRYLSSRRSSEDSLEDGGSLRELRHELKEVEEKFRKAMIANAQLDNDKAAHTYQLELLKDRLQELEEQHSQLKREHREKCRDHDQLKRLCTKLKEDFTMAKAELEERDQLIAEKGLIIVTAEVPPDEDELIQPFKKSLISIENAQLLENAGDGSLDVRLAKFVKEKSELEDQISHLKLELEEEKSKRRKHSSADLLNGPFSEYDYDDVQRETSKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEISEQSEEALKAEKRKLQREVCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00722044; iTF_00391928; iTF_00056588; iTF_00329385; iTF_00387242; iTF_00458923; iTF_00792177; iTF_00755636; iTF_00026047; iTF_00392757;
- 90% Identity
- -
- 80% Identity
- -