Aaln016627.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- lrrfip2
- Assembly
- GCA_950111635.2
- Location
- OX467710.1:29165693-29181577[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-112 7e-108 362.2 24.2 1 300 22 309 22 309 0.95 2 2 0.013 7.9e+02 0.8 0.3 121 161 308 348 307 359 0.71
Sequence Information
- Coding Sequence
- ATGCTACGCGTAGCAGAAATGAGGATGCTGAGAGCGATAGCCGGCAAAACCCGGAGGGATCACgcAGAGGCGCGATTATGGGCAAAAAGACAAGCCAGAGCCGAAGCAAGAGATATACGCATGCGAGAACTAGAACGTCAACAAAAAGAACAAGAAGAAAACGCGGATAGACAATTCGACATGTTGGCTTCCGAACCAACCTCATTGGTGAGGACACCGAGAAGTGCTGGAACTCGATATTTATCCAGCAGAAGAAGTTCGGAGGATTCTCTGGAAGATGGTGGGAGTCTAAGGGAGTTAAGGCACGAATTAAAAGAAGTCGAAGATAAATTTCGAAAAGCGATGATAGCCAATGCTCAATTGGATAACGACAAAACTGCGCAAACGTATCAGTTGGAGTTACTCAAAGATAGACTAGAAGAATTGGAAGAAGAACACTCCCAAATAAAAAGAGAACATCGGGACAAGTGTCGGGAACACCAATCGTTAAAAAGTATATGTACCAAGTTAAAAGACGATCTCGCTTTAACGAGGTATGAACTCGAAGAACGTGATCGACTGATTGCCGAAAAAGGTCTGGTGATAGTAGGAGAGGAAGTACCTCCTGACGAAGATGGTACTCAATACCCACCGAAAAAGGCGCTAGTTAGTGTGGAAAATGCTCATCTGCTGGAAACTGCCGGGGACGGAagtttggATGTGCGGTTAACCCGATTTCTGAAGGAGAAAACCGAATTACAAGATCAAATTAGCCATTTAAAACTAgaattagaagaagaaaaaaataaaaggaggAAACCAAGTTCGAGTGGTATTCTAAATGGACCTTCTTCTGATTATGACTATGATGACATGCAAAGGGAAGCAAGTAAACAACTGTCTGATTGGAAATTTAGAGCGCAGAAAGCGGAGCAAGATGTAGCAACTCTGCAAGCAACGGTAGCGCGACTGGAGAGTCAAGTAATAAGATATAAAACTGCTGCTGAAATTTCGGAACAGTCTGAAGAAGCGCTAAAGgctgaaaaaagaaaattacagCGGGaggATTCAAATTCTTTAACTGATTTTTCAACTGATGTTTCTGAAAGCATTTAA
- Protein Sequence
- MLRVAEMRMLRAIAGKTRRDHAEARLWAKRQARAEARDIRMRELERQQKEQEENADRQFDMLASEPTSLVRTPRSAGTRYLSSRRSSEDSLEDGGSLRELRHELKEVEDKFRKAMIANAQLDNDKTAQTYQLELLKDRLEELEEEHSQIKREHRDKCREHQSLKSICTKLKDDLALTRYELEERDRLIAEKGLVIVGEEVPPDEDGTQYPPKKALVSVENAHLLETAGDGSLDVRLTRFLKEKTELQDQISHLKLELEEEKNKRRKPSSSGILNGPSSDYDYDDMQREASKQLSDWKFRAQKAEQDVATLQATVARLESQVIRYKTAAEISEQSEEALKAEKRKLQREDSNSLTDFSTDVSESI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226914;
- 90% Identity
- iTF_00910745;
- 80% Identity
- -