Dcar012726.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029229535.1
- Location
- CM055257.1:33429758-33436693[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-113 4.7e-109 364.8 23.1 1 300 57 344 57 344 0.95 2 2 0.11 2.8e+03 -2.2 3.9 7 235 376 415 355 419 0.45
Sequence Information
- Coding Sequence
- ATGAGTGAAGGAATGTCGGAAGACGTGGTAAAAAATGGCGCGTTATCGATCAGAGGTGTTACAACAACAGAAACTTCGGATTATACGGGGGACGTTAGTGATTTTAGTGATTCCGTTGTAAATGACGATAATGTGATAGATTCTTTTATGCAAAGTACTAGCGAAGAAGCAGAGGCACGGTTATGGGCGAAAAGACAAGCCAGAGCGGAAGCGAGAGAGATACGCATGCGCGAATTGGAAAGGCaacaaaaagaacaagaagaaaacgCCGACAGACAATTCGATATGTTAGCTTCCGAACCGACTTCCTTGGTGAGGACTCCAAGAAGTGCCGGTACTCGGTATCTGTCAAGTCGAAGGAGCTCCGAAGATTCGTTGGAAGACGGCGGAAGCTTAAGAGATTTAAGGCACGAATTGAAAGAGGTCGAAGAAAAATTCCGGAAAGCCATGATAGCAAATGCGCAGCTAGACAACGACAAAACTGCGCAAACGTATCAATTAGAACTGTTAAAAGATAGATTGGAAGAATTGGAGGAAGATCATTCGCAATTAAAAAGGGAACACAGAGATAAATGTCGTGAATATCAAACGTTAAAAAGTTTATGCACTAAATTGAAAGATGATTTAGTACTGACGAGGTACGAACTTGAGGAACGGGATCGACTGATAACCGATAAGGGATTAGTGATAGTAGGAGAAGAACTCCCGCCGGACGAAGATGGTACCCAGCATCCCCCGAAGAAAGCATTAGTCAGCGTCGAAAATGCCCATCTATTAGAAACGGCCGGTGATGGAAGTTTGgatgTTCGATTATCGAGATTCCTGAAGGAGAAAACTGAACTTCAGGATCAAATTAGCCATTTAAAACTAGAATtagaagaagagaaaaataagAGAAGGAAACCGAGTTCGAGTGGAATTTTGAACGGACCCTCTTCGGATTATGACTTTGATGATATACAAAGAGAAGCCAGTAAACAATTATCCGATTGGAAATTTAGGGCTCAGAAAGCGGAACAGGATGTGGCGACGTTGCAAGCTACTGTAGCCCGATTAGAAAGTCAAGTAATTAGGTATAAAACAGCTGCTGAAATTTCGGAACAATCCGAAGAGGCTCTTAAAGCTGAAAAAAGGAAACTTCAACGAGAGgcaAGAGATGCTCTTAGTCGAGCCGAAGAATTGGAAACTTCAAATACCCATTTATTAAAGAgattagataaattaaaaaatgcaaaatcgGCCTTACTCAAAGAACTATAG
- Protein Sequence
- MSEGMSEDVVKNGALSIRGVTTTETSDYTGDVSDFSDSVVNDDNVIDSFMQSTSEEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLASEPTSLVRTPRSAGTRYLSSRRSSEDSLEDGGSLRDLRHELKEVEEKFRKAMIANAQLDNDKTAQTYQLELLKDRLEELEEDHSQLKREHRDKCREYQTLKSLCTKLKDDLVLTRYELEERDRLITDKGLVIVGEELPPDEDGTQHPPKKALVSVENAHLLETAGDGSLDVRLSRFLKEKTELQDQISHLKLELEEEKNKRRKPSSSGILNGPSSDYDFDDIQREASKQLSDWKFRAQKAEQDVATLQATVARLESQVIRYKTAAEISEQSEEALKAEKRKLQREARDALSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226914;
- 90% Identity
- iTF_01047276;
- 80% Identity
- -