Chae011730.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958298965.1
- Location
- OY282586.1:23960838-23975208[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-113 7.6e-109 365.4 25.9 1 300 25 312 25 312 0.96 2 2 0.041 2.5e+03 -0.8 3.1 194 232 345 380 313 387 0.42
Sequence Information
- Coding Sequence
- ATGATAAGTCAGCGAAACAAAAGACGAAAACAGCCAAAATTGGAGTCTTTAGTGAAGTTTATTGCACAGCAGgccgAAGCTCGGTTGTGGGCGAAGCGCCAAGCCAGGGCGGAGGCGAGGGAGATACGAATGCGAGAGCTGGAACGGCAGCAGAAGGAGCAGGAAGAGAACGCTGACAGACAGTTCGACATGCTGGCGGAACCGGTAGCTGTGGTAAGGACTCCGCGGACCTCCGCGGGAAGCAGATATCTGTCAAGCCGGAGGAGCTCAGAGGATTCCTTGGAGGACGGGGGCAGTCTCAGGGAATTGAGGCATGAACTCAAAGAAGTTGAAGATAAGTTTCGAAAAGCCATGATTGCTAACGCTCAGATGGACAATGATAAAACGGCACAGACTTACCAGTTGGAATTGTTGAAGGATAgGTTAGAGGAGTTGGAAGAGGAGTACTCACAGCTGAAGAGAGAACACAGAGATAAATGCAGGGAACATGATCAGTTGAAGAGGTTATGTGTTAAACTAGAGGATGATCTGGCTGTGACAAAATATGAACTGGAAGAGAGGGATCGACTAATTTCTGAAAAAGGTTTAGTGATAGTAGGCGAAGAAGTACCACCCGATGAGGATGGTACTATACACCCCCTCAAAAAAGCCCTTGTTAGCGTTGAAAATGCCCAATTGTTGGAAAGTGCAGGTGACGGAAGTTTAGaTGTTCGGTTGGCCAGGTTTGCGAAGGAGAAGATCGAGTTACAGGACCAAATTAGCCATTTAAAATTAGAATTAGAAGAGGAAAAAAGCCGAAGGAGGAAACCAAGTTCTACTGGACTTCTCAACGGGCCATCTTCAGACTATGATTACGATGATATACAAAgGGAAGCAAGTAAACAGTTGGCAGACTACAAATTTAGAGCCCAAAAGGCTGAGCAAGATGTAGCAACGTTGCAAGCAACAGTAGCACGCCTAGAAAGTCAAGTGATAAGATATAAGACAGCCGCAGAAGTATCAGAACAATCTGAGGAAGCACTCAAatctgaaaaaagaaaattacaaAGAGAGgCAAGGGATGCCCTTAGCAGAGCAGAAGAATTAGAAACATCAAATACACATTTACTCAAAAGATTAGACAagttgaaaaatgcaaaatccGCTTTATTGAAAGAACTGTGA
- Protein Sequence
- MISQRNKRRKQPKLESLVKFIAQQAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPVAVVRTPRTSAGSRYLSSRRSSEDSLEDGGSLRELRHELKEVEDKFRKAMIANAQMDNDKTAQTYQLELLKDRLEELEEEYSQLKREHRDKCREHDQLKRLCVKLEDDLAVTKYELEERDRLISEKGLVIVGEEVPPDEDGTIHPLKKALVSVENAQLLESAGDGSLDVRLARFAKEKIELQDQISHLKLELEEEKSRRRKPSSTGLLNGPSSDYDYDDIQREASKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKSEKRKLQREARDALSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226914;
- 90% Identity
- iTF_00328104;
- 80% Identity
- -