Avir004732.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- lrrfip2
- Assembly
- None
- Location
- GWHAMMQ00000180:363003-379477[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-112 2.6e-108 361.8 25.6 1 300 73 360 73 360 0.95 2 2 0.11 2e+03 -2.2 3.8 7 235 392 431 372 435 0.44
Sequence Information
- Coding Sequence
- ATGAGTATAAAAGATGTTGATATTAATATGAGTGCGAAAAGTAATGATTTGGATATCAGTGAAGTGAATAATAACGTGGTAGTACTAAATGATGTTACAACTACAGAATCCTCTGATTATATTGAGGAAACTGATACTCTTAGTGACTTAGGTAGTGAAATATTGGAAAACGAAAGTAACGTTATTGATACATATATGCAATGTACCACTAAAGAGGCTGAGGCACGATTATGGGCAAAGAGGCAAGCGAGGGCGGAAGCAAGAGAGATCCGAATGCGCGAATTGGAGCGACAACAAAAAGAACAAGAAGAAAATGCTGATAGGCAATTTGATATGTTATCTTCGGAACCAACTTCATTGGTCAGGACGCCAAGGAGCGCTGGTAGTAGGTACCTGTCAAGTAGGAGGAGCTCGGAAGATTCGTTGGAGGATGGAGGAAGTCTACGAGAGTTAAGGCATGAGCTAAAAGAAGTGGAAGAAAAATTTAGAAAAGCCATGATAGCAAATGCTCAGTTAGACAATGATAAATCAGCGCAGACGTACCAATTGGAATTATTAAAAGATAGGTTGGAAGAACTAGAAGAAGAACACTCTCAATTGAAAAGGGAACATAGGGATAAATGCCGAGAATATCAGACGTTAAAAAGCATTTGCACTAAATTAAAAGATGATTTAGCATTTGCAAAATATGAGCTAGCGGAAAGAGATAGACTTATAGCAGAAAAGGGTTTGGTGATAGTAGGCGAGGAAGTACCACCCGATGAGGATGGTACTCAGTATCCGCCGAAAAAAGCACTTGTTAGTGCTGAAAATGCCCATCTTTTGGAATCAGCTGGCGATGGAAGTTTAGACGTGCGGTTATCCCAATTCCTTAAAGAAAGAACCGAACTACAAGATCAAATAAGCCATTTAAAATTAGAGTTAGAAGAGGAAAAAAGTAAAAGGAGAAAGCATAGTTCAAGTGGTATTTCCAACGGACCATCCTCCGATTATGATTACGACGACATTCAAAGAGAAGCAACTAAACAGTTGGCCGACTGGAAATTCCGTGCTCAAAAAGCTGAACAGGATACGGCAACATTACAAGCGACAGTAGCACGGCTTGAAAGTCAGGTTATTAGGTATAAGACTGCTGCCGAAATTTCAGAACAGTCCGAGGAGGCCCTTAAGGCTGAAAAACGGAAGCTTCAGAGAGAGGCTAGAGATGCGCTGAATCGGGCAGAAGAATTAGAAACTTCAAATACCCACTTACTCAAGAGATTAGATAAGTTAAAAAATGCCAAATCGGCCTTACTGAAAGAACTCTGA
- Protein Sequence
- MSIKDVDINMSAKSNDLDISEVNNNVVVLNDVTTTESSDYIEETDTLSDLGSEILENESNVIDTYMQCTTKEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLSSEPTSLVRTPRSAGSRYLSSRRSSEDSLEDGGSLRELRHELKEVEEKFRKAMIANAQLDNDKSAQTYQLELLKDRLEELEEEHSQLKREHRDKCREYQTLKSICTKLKDDLAFAKYELAERDRLIAEKGLVIVGEEVPPDEDGTQYPPKKALVSAENAHLLESAGDGSLDVRLSQFLKERTELQDQISHLKLELEEEKSKRRKHSSSGISNGPSSDYDYDDIQREATKQLADWKFRAQKAEQDTATLQATVARLESQVIRYKTAAEISEQSEEALKAEKRKLQREARDALNRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226914;
- 90% Identity
- iTF_01047276;
- 80% Identity
- -