Eads010882.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000031.1:58788-63597[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-111 4.9e-107 358.4 31.1 1 300 28 314 28 314 0.96 2 2 0.16 4.8e+03 -2.8 3.2 3 36 342 377 340 387 0.59
Sequence Information
- Coding Sequence
- ATGGACAGCGCGGGGGGTCGAAGGCGAACGGCAACAAAGTCATCTGCAGAAGATCAAGCTCTGGACCAGATCGCCAAAGAGGCGGAAGCTAGACTGTGGGCGAAGAGGCAGGCACGGGCAGAGGCAAGGGAGATCCGTATGCGCGAACTGGAGCGCCAGCAAAAAGAACAAGAAGAGAATGCAGACAGACAGTTCGACATGTTGGTGGAGCCAACGGTGCGAACCCCCAGAAGTGCCATCGGTGGTACCCGATACTTATCTAGCCGGAGAAGCTCTGAAGATTCCCTGGAGGATGGAGGTAGCCTTAGAGAATTAAAGCATGAACTCAAGGAGGTCGAGGAGAAATTCAGGAAAGCCATGATTGCCAATGCTCAACTCGACAATGACAAAGCCTCGCATACGTACCAGTTGGAGCTGTTAAAAGACAGATTAGAAGAGTTAGAAGAAGAACATTCCCAGTTGAAGAGAGAACACCGTGATAAGTGCAGGGAACATGACCAGCTCAACAGATTGTGTGCCAAATTGAAAGATGACTTGGCTGTGACTAAAGCTGAACTGGAAGAGAGGGACCAGTTGATCGCAGAGAAGGGTCTGATGATTGTAATGGAGGAGGCGCCTCCTGATGCGGACGAGTCGGAGAGGTTCCCCAAGAAAACTTTAATTAGCATAGAGAATGCCCAGTTGTTAGAAAATGCCGGAGATGGAAGTTTAGatgttCGGTTATCCAAATTTGTAAAAGAGAAAAGTGATTTACAAGACCAAATTAgccatttaaaattagaattagaagaagAAAGGAGTAAAAGGAGGAAGTATAGTTCGGCGGATCTTCTTAACGGGCCATCATCAGACTATGATTACGACGATGTTCAAAGAGAAACTAGCAAACAACTCGCCGAGTATAAATTTAGGGCGCAAAAAGCTGAACAAGATGTAGCCACACTGCAAGCAACTGTTGCCAGACTCGAAAGTCAAGTTATAAGATATAGAACTGCCGCAGAAATATCGGAGCAATCGGAAGAGGCGCTTAAGGCGGAAAAGAGGAAATTGCAAAGAGAAGCAAGGGATGCTTTAACCAGAGCAGAAGAATTGGAGACGTCAAATACCCACCTGCTCAAGAGACTAGATAAATTGAAAACTGCGAAATCTGCGTTGCTAAAAGAACTTTGA
- Protein Sequence
- MDSAGGRRRTATKSSAEDQALDQIAKEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLVEPTVRTPRSAIGGTRYLSSRRSSEDSLEDGGSLRELKHELKEVEEKFRKAMIANAQLDNDKASHTYQLELLKDRLEELEEEHSQLKREHRDKCREHDQLNRLCAKLKDDLAVTKAELEERDQLIAEKGLMIVMEEAPPDADESERFPKKTLISIENAQLLENAGDGSLDVRLSKFVKEKSDLQDQISHLKLELEEERSKRRKYSSADLLNGPSSDYDYDDVQRETSKQLAEYKFRAQKAEQDVATLQATVARLESQVIRYRTAAEISEQSEEALKAEKRKLQREARDALTRAEELETSNTHLLKRLDKLKTAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226914;
- 90% Identity
- -
- 80% Identity
- -