Pmar014868.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_900065295.1
- Location
- FIZT01058430.1:21190-25459[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1e-92 4.4e-88 295.7 27.2 1 300 30 339 30 339 0.90 2 3 0.0063 1.3e+02 1.9 3.9 121 172 338 389 337 395 0.89 3 3 0.051 1.1e+03 -1.1 0.2 218 239 393 414 385 414 0.73
Sequence Information
- Coding Sequence
- ATGGACAGTTACGCTATCGGCGGTCGTAAAAGGGCACCGAGTAATCATACAATCGAAGATCAAGCTTTAGATCAAATCGCTAAACAGGCTGAATGTCGTTTGGCTGCTCGTCGACAAGCTCGTGCTGAAGCTAAAGAAATACGAATGCGGGAAATCGAAAGACAGCAAAGGGAAGCTGAAGAAAACgctgacaaaattttcgatataaATAATACTGTGGATTCGGCGAATCGTGGATTACGAAATACGTCTTGCGTTAATAATAGGAATACCTCTGTTATATCATCGCCGGTAACCAACACGAGTAGAAGGAGTTCCGAAGACTCGTTGGAAGATGGGTTCAATTATCGCGATATCAAACTAGAACTGAAGGAGCTCGAAGAGAAATTCCGTAAAGCCATGATTCAAAATGCTCAGTTAGACAATGAAAAATCGGCTATATTATATcaagttgaattattcaaagatAAATATCAAGATTTAGAAGCAGCATTTTCAGTATTACAAaaagaaCATAAAGACAAATGCAGAGAACACGAGCAGCTGAAAAGATTATTTATCAAACAAAAAGaagatttagattttttcaaatcgcaaTTAGAAGAAAGAGACAGATTGATCGAAGAGCAAGGTTTAGTTGTGATAACAAACGGCGATGAAAATGGTATTCATAGTTCGCTAGAAGACGAACACAACGATAGCAATCATGTTGATTATAAGCGAAAATTGTCCAATCGAGTATTAATATCTTCTCAATCGGCCGAACTGCTGCAAAACTTAGGAGAAGGTTCTTTGGACgatagattaaaaaaatacacccaaGAACGTAAAGAACTGCTAAGCGAAATAAGCAAACTTAAGTTAGAATTAGATGAAGAACGGATAAAATCCTCTGGTAACTGCTTCGGTATGATGAATGGCTCCAATAATGATGAATTTGACGAATCAaGAGATGTCTCAAGTTTACTCGGAGATTACAAATTTAAATGGCAAAAAGCTGAACAAGATATATCAACATTGCAAGCtaatgttgCTCGATTAGAGAGTCAAGTTATTAGGTATAAATCGGCGGCAGAAACGTCCGAAAAAGTTGAAGACGAattgaaagtagaaaaaaggAAGTTGCAAAGAGAGttacGCGAAGCGCAATCAAGAGTTGAAGAATTGGAGACGACAAATATGCATTTACAGCGACGAttagataaattgaaaaatgctaaatCGGCGCTGTTAAAGgagatttga
- Protein Sequence
- MDSYAIGGRKRAPSNHTIEDQALDQIAKQAECRLAARRQARAEAKEIRMREIERQQREAEENADKIFDINNTVDSANRGLRNTSCVNNRNTSVISSPVTNTSRRSSEDSLEDGFNYRDIKLELKELEEKFRKAMIQNAQLDNEKSAILYQVELFKDKYQDLEAAFSVLQKEHKDKCREHEQLKRLFIKQKEDLDFFKSQLEERDRLIEEQGLVVITNGDENGIHSSLEDEHNDSNHVDYKRKLSNRVLISSQSAELLQNLGEGSLDDRLKKYTQERKELLSEISKLKLELDEERIKSSGNCFGMMNGSNNDEFDESRDVSSLLGDYKFKWQKAEQDISTLQANVARLESQVIRYKSAAETSEKVEDELKVEKRKLQRELREAQSRVEELETTNMHLQRRLDKLKNAKSALLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00194309; iTF_01472464; iTF_01490970; iTF_01177744; iTF_00170691; iTF_00669580; iTF_00725517; iTF_01262455; iTF_01263369;
- 90% Identity
- iTF_00194309; iTF_01472464; iTF_01490970; iTF_00725517; iTF_01177744; iTF_01262455; iTF_01263369;
- 80% Identity
- -