Psol003425.1
Basic Information
- Insect
- Phenacoccus solenopsis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_009761765.1
- Location
- chr2:29123788-29129470[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-93 1.4e-89 299.7 28.9 1 300 30 340 30 340 0.90 2 2 0.018 2.1e+02 0.4 5.2 121 172 339 390 338 408 0.81
Sequence Information
- Coding Sequence
- ATGGACAGTTATGCCCTCGGCGGTCGTAAAAGAGCTCCTAGTAATCATGCTATCGAAGATCAAGCTCTGGATGAAATCGCCAAACAGGCTGAATGCCGTTTGGCAGCTCGTCGTCAAGCCCGTGCCGAAGCTAGAGAAATACGAATGCGTGAAGTTGAAAGACAACAAAGGGAAGCCGAAGAAAACGCTGATAAAATATTCGATATACATAATTCCGTGGATTCGTCGAGTAGGAGTTTACGAAATACACCTTGCGTAAATAATAGAAATACATCTGTTATATCGTCACCAGTGAGTAACACGAGTAGAAGGAGTTCCGAAGATTCCTTAGAAGATGGGTTCAATTATCGAGATATCAAGCTGGAACTAAAAGAATTGGAGGAAAAATTTCGCAAAGCCATGATTCAAAATGCTCAATTAGATAATGAAAAATCAGCGGTGCTATACCAAGTCGAACTGTTCAAGGATAAGTATCAAGATTTGGAAGCAGCGTATTCAGTATTACAGAAAGAGCATAAAGAGAAATGTCGGGAACACGAACAGCTGAAAAGATTATTTGTCAAACAAAAAGAAGATTTAGATTTTTTCAGGTCGCAGTTAGAAGAGAGAGATAGATTGATTGAAGAACAAGGCTTAGTTGTGATAACGAACGGTGATGAAAACGGTATTCATAATTCGTTCGATGAAGATCAACAAAATGACAGTAATCACGTAGATTATAAAAGAAAGCTGTCGAATCGAGTGTTAATCTCATCGCAGTCTGCTGAATTATTGCAGAATTTAGGCGAGGGTTCGTTAGATGGTAGATTAAAAAAATACGCGCAAGAACGGAAAGAATTGCTAAGCGAAATCAGTAAATTAAAATTAGAATTGGAAGAAGAACGGATAAAATCTTCGGGAAATTGTTATAACATTATGAATGGTTCGGATAACGAGGACTTCGATGATTCGAGAGATAATTCGAAATTAGTTGGAGATTATAAATTTAAATGGCAAAAAGCCGAACAAGATATATCAACGTTACAAGCTAATGTTGCAAGATTAGAAAGTCAAGTAATTAGGTATAAATCAGCGGCAGAGACTTCGGAAAAAATCGAAGATGAATTAAAAGTCGAAAAAAGGAAATTACAAAGAGAATTACGCGAAGCGCAGTCACGAGTTGAAGAATTGGAAACAGAAAATATGCATCTTCATAAGCGGCTAGATAAATTATTAAAAAATGCCAAATCGGCTCTTTTAAAAGAGAAATAA
- Protein Sequence
- MDSYALGGRKRAPSNHAIEDQALDEIAKQAECRLAARRQARAEAREIRMREVERQQREAEENADKIFDIHNSVDSSSRSLRNTPCVNNRNTSVISSPVSNTSRRSSEDSLEDGFNYRDIKLELKELEEKFRKAMIQNAQLDNEKSAVLYQVELFKDKYQDLEAAYSVLQKEHKEKCREHEQLKRLFVKQKEDLDFFRSQLEERDRLIEEQGLVVITNGDENGIHNSFDEDQQNDSNHVDYKRKLSNRVLISSQSAELLQNLGEGSLDGRLKKYAQERKELLSEISKLKLELEEERIKSSGNCYNIMNGSDNEDFDDSRDNSKLVGDYKFKWQKAEQDISTLQANVARLESQVIRYKSAAETSEKIEDELKVEKRKLQRELREAQSRVEELETENMHLHKRLDKLLKNAKSALLKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150345;
- 90% Identity
- iTF_01150345;
- 80% Identity
- -