Plon007417.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_900064475.1
- Location
- FIZU01012561.1:10502-15740[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.1e-92 1.2e-87 294.4 27.7 1 300 30 344 30 344 0.90 2 3 0.0082 1.9e+02 1.5 3.7 121 171 343 393 342 398 0.87 3 3 0.12 2.9e+03 -2.4 6.5 135 164 378 407 361 419 0.40
Sequence Information
- Coding Sequence
- ATGGACAGTTACGCCATCGGCGGTCGTAAAAGGGCGCCAAGTAATCATACAATCGAAGATCAAGCTTTGGATCAAATTGCTAAACAGGCTGAATGTCGTTTGGCTGCTCGTAGACAAGCTCGCGCCGAAGCTAAAGAAATACGAATGCGTGAAATTGAACGACAACAAAGAGAAGCAGACGAAAACCTGGATAAAATTTACGATATCACTAGTAATGCGGGCTTCAATtcggTGGATTCGGCGAATCGTGGAATACGAAGTACGTCTTGCGTAAATAATAGGAATACATCTGTTATATCATCACCAGTAAGCAACACGAGTAGAAGAAGTTCCGAAGACTCGTTGGAAGATGGGTTCAATTATCGCGATATCAAACTCGAACTGAAAGAACTAGAAGAGAAGTTTCGTAAAGCAATGATTCAAAATGCTCAGTTGGATAACGAAAAGTCAGCTATATTATACCAAGTGGAACTATTCAAAGATAAATATCAAGATTTAGAAGCAGCATTCTCAGTATTACAAAAAGAACATAAAGACAAATGCAGAGAACACGAACAGTTGAAGAGATTATTTATCAAGCAAAAAGAAGATCTGGATTTCTTCAAATCGCAATTAGAAGAACGAGATAGGTTGATCGAGGAGCAAGGCTTAGTTGTGATAACGAACGGCGACGAAAATGGTATTCATAGTTCACTCGAGGATGAACAAAACGATAGTGATCATATTGAATATAAACGTAAATTGTCTAACCGAGTATTGATATCGTCACAATCTGCTGAGTTGTTACAGAACTTAGGAGAAGGCTCATTAGatagtagattaaaaaaatacgccCAAGAACGTAAAGAACTTCTAAGCGAGATCACTAAACTTAAATTAGAATTAGATGCTGAACGAATAAAGTCTTCTGGGAATTGCTCTAGTATACTGAATGGCTCTGATAACGACGATTTCGACGAATCAAGAGAAACGTCAAAATTAGTTGGCGATTACAAATTCAAATGGCAGAAAGCTGAACAAGATATATCAACGTTACAAGCTAatGTTGCCCGATTAGAGAGTCAAGTTATTAGGTATAAATCGGCTGCAGAAACGtcagaaaaagttgaagatgaattgaaagttgaaaaaagaaaattacaaaggGAGttacGTGAAACGCAATCGAGAGTTGACGAATTGGAGACGGAAAATACGCATTTACAGCGACGAttagataaattgaaaaatgccaaatcgGCGCtgttgaaagaaatttga
- Protein Sequence
- MDSYAIGGRKRAPSNHTIEDQALDQIAKQAECRLAARRQARAEAKEIRMREIERQQREADENLDKIYDITSNAGFNSVDSANRGIRSTSCVNNRNTSVISSPVSNTSRRSSEDSLEDGFNYRDIKLELKELEEKFRKAMIQNAQLDNEKSAILYQVELFKDKYQDLEAAFSVLQKEHKDKCREHEQLKRLFIKQKEDLDFFKSQLEERDRLIEEQGLVVITNGDENGIHSSLEDEQNDSDHIEYKRKLSNRVLISSQSAELLQNLGEGSLDSRLKKYAQERKELLSEITKLKLELDAERIKSSGNCSSILNGSDNDDFDESRETSKLVGDYKFKWQKAEQDISTLQANVARLESQVIRYKSAAETSEKVEDELKVEKRKLQRELRETQSRVDELETENTHLQRRLDKLKNAKSALLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150345;
- 90% Identity
- iTF_01150345;
- 80% Identity
- -