Fvir018293.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_900060175.1
- Location
- FIZR01002773.1:36304-40604[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.7e-93 1.3e-88 297.3 26.9 1 300 30 333 30 333 0.89 2 3 0.0044 88 2.4 3.9 120 171 331 382 330 386 0.91 3 3 0.16 3.2e+03 -2.7 6.1 136 226 368 395 351 408 0.38
Sequence Information
- Coding Sequence
- ATGGACAGTTACGCCATCGGGGGTCGTAAAAGAGCTCCAAGTAATCACATCATTGAAGATCAAGCACTGGATCAAATTGCTAAACAGGCCGAATGTCGTTTAGCTGCTCGTCGACAAGCTCGTGCCGAAGCTAGAGAAATACGAATGCGGGAAATTGAAAGACAGCAAAAAGAACAGGAAGAAAAtgctgataaaattttcgatatcaATAATGCCgTTGATTCGGCGAATCGTGGGCTACGGAATACGTCTTGCGTAAATAATAGGAATACATCTGTTATATCATCACCAGTGAGCAACACAAGTAGAAGAAGTTCCGAGGACTCGTTGGAAGATGGGTTTAATTATCGCGATATCAAATTAGAATTAAAAGAACTCGAAGAGAAATTTCGTAAAGCGATGATTCAAAATGCTCAATTGGACAATGAAAAGTCAGCAATATTATATCAAGTAGAATTATTCAAAGATAAATATCAAGATTTGGAGGCTGCCTACTCAGTATTACAAAAAGAACATAAAGACAAATGTAGGGAACACGAACAGCTGAAAAGATTATTTATCCAGCAAAAAGAAGATCTGGATTTCTTTAAATCACAATTAGAAGAAAGAGATAGATTAATTGAAGAGCAAGGTTTAGTTGTGATAACGAATGGTGATGAAAATGGTATTCATAGTTCACTCGACGATGAACAAAATGATGTTAATCATATtgattataaaagaaaattatctaATCGGGTGTTAATATCTTCGGAATCCGcacaattattacaaaatttaggAGAAGGATCTTTAGatggaagattaaaaaaatatgctcaAGAACGGAAAGAACTTTTAAGTGAAATTAGTAAACTTAAATTAGAATTAGAAGAAGAACGAATAAAATCTTCTGGTAACTGCTTTAGTATGATAAATGGCTCTGATAATGGAGAAACATCAAAATTAGTCGGGgattataaattcaaatgGCAGAAAGCTGAGCAAGATATATCAACATTGCAAGCTAATgtTGCTCGATTGGAAAGTCAAGTTATAAGATATAAATCGGCTGCAGAAACTTCGGAGAAAGTTGAAGacgaattaaaagttgaaaaaagaaaacttcaaaGAGAATTGCGGGAAGCGCAATCACGAGTCGAGGAACTGGAGACAGCCAATATGCATTTACAGCGACGAttagataaattgaaaaatgctaaGTCGGCGTTgttaaaagaaatttga
- Protein Sequence
- MDSYAIGGRKRAPSNHIIEDQALDQIAKQAECRLAARRQARAEAREIRMREIERQQKEQEENADKIFDINNAVDSANRGLRNTSCVNNRNTSVISSPVSNTSRRSSEDSLEDGFNYRDIKLELKELEEKFRKAMIQNAQLDNEKSAILYQVELFKDKYQDLEAAYSVLQKEHKDKCREHEQLKRLFIQQKEDLDFFKSQLEERDRLIEEQGLVVITNGDENGIHSSLDDEQNDVNHIDYKRKLSNRVLISSESAQLLQNLGEGSLDGRLKKYAQERKELLSEISKLKLELEEERIKSSGNCFSMINGSDNGETSKLVGDYKFKWQKAEQDISTLQANVARLESQVIRYKSAAETSEKVEDELKVEKRKLQRELREAQSRVEELETANMHLQRRLDKLKNAKSALLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150345;
- 90% Identity
- iTF_01150345;
- 80% Identity
- -